PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019182888.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 641aa MW: 69976.9 Da PI: 7.0139

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019182888.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.1	6.9e-16	316	375	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_019182888.1 316 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDNEEKAARAYDLAALKYWG 375 78*****************988886678446***********************98 PP
2	AP2	41.9	2.6e-13	418	470	1	55
AP2 1 sgykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV +++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_019182888.1 418 SIYRGVtSRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 470 579**99******988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 641 aa Download sequence
MNSLSNDGNS NWLGFSLSPQ MNNMEGSHGH GHGSSSVSSA SVPLSFSQAA PSHINYNNTT 60 GGSCYYGGDQ TENAAFLSSL SVMPLKSDGS LCIMEAFNNR SHPQGLAPKL EDFFGDAAMG 120 THHYDRTGGG GMALSLDSMY YHNQNPENEA THSQDFLTHL QQKSRHHHHQ FQDFTGELRG 180 PEIYQQGQGK AHQCGSLEVP SMEDNNQMKN WDSRSYSAGG GHAALEQQKM MGCMDAEPGA 240 ITAMGYGDFH SLSLSMSPGS QSSCVNVNVN PTQHHQIPPT VADCMAMETK KRGLEKVEQK 300 QIVHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQSRKGRQ VYLGGYDNEE 360 KAARAYDLAA LKYWGPSTHI NFSSENYQQE LEDMKNMTRQ EYVAHLRRKS SGFSRGASIY 420 RGVTSRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG VNAVTNFDIS 480 RYDVDRIMAS TNLLAGEQAR RNKDAGPPPS NIEVVTKNPN QNGGGDHGSV HQEDNANAGG 540 AAPDWRIALY QSTAEAAPPQ SSSACFGLGE SAARTLMSAH LSNASSLVTS VESSRECSPD 600 KMNTVGMGSA AATSSSTSSW ISSAQLRPHV PVFAAWTDNI I

Sequence ? help Back to Top

Protein Sequence Length: 641 aa Download sequence

MNSLSNDGNS NWLGFSLSPQ MNNMEGSHGH GHGSSSVSSA SVPLSFSQAA PSHINYNNTT  60
GGSCYYGGDQ TENAAFLSSL SVMPLKSDGS LCIMEAFNNR SHPQGLAPKL EDFFGDAAMG  120
THHYDRTGGG GMALSLDSMY YHNQNPENEA THSQDFLTHL QQKSRHHHHQ FQDFTGELRG  180
PEIYQQGQGK AHQCGSLEVP SMEDNNQMKN WDSRSYSAGG GHAALEQQKM MGCMDAEPGA  240
ITAMGYGDFH SLSLSMSPGS QSSCVNVNVN PTQHHQIPPT VADCMAMETK KRGLEKVEQK  300
QIVHRKSIDT FGQRTSQYRG VTRHRWTGRY EAHLWDNSCK KEGQSRKGRQ VYLGGYDNEE  360
KAARAYDLAA LKYWGPSTHI NFSSENYQQE LEDMKNMTRQ EYVAHLRRKS SGFSRGASIY  420
RGVTSRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG VNAVTNFDIS  480
RYDVDRIMAS TNLLAGEQAR RNKDAGPPPS NIEVVTKNPN QNGGGDHGSV HQEDNANAGG  540
AAPDWRIALY QSTAEAAPPQ SSSACFGLGE SAARTLMSAH LSNASSLVTS VESSRECSPD  600
KMNTVGMGSA AATSSSTSSW ISSAQLRPHV PVFAAWTDNI I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-130	AP2 family protein