PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019178216.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 296aa    MW: 32416.9 Da    PI: 4.9828
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019178216.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.9e-20123173155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +grW+AeIrdp+    r kr +lg+f+++eeAa  +++a+ +l+g
  XP_019178216.1 123 KKFRGVRQRP-WGRWAAEIRDPT----RgKRLWLGTFDSPEEAATVYDNAAVRLKG 173
                     59********.**********84....35************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MVFEAAMDLG SPATVRFSEH VIMTNKHVPE GSSGSGTLRN RVVRIVVTDG DATDSSDDEG  60
ERAVGRSRRV KRHVSEIRFV PPPPSSSASS QRKENMVQFT SSGSKKRGLS DVTSSESDAC  120
SRKKFRGVRQ RPWGRWAAEI RDPTRGKRLW LGTFDSPEEA ATVYDNAAVR LKGPDAVTNF  180
PKQTVTITAV DTALTSNNAA LSPASVLRYD DSTPFDSPVQ SDVTPNEAAA PAAGEFTALD  240
NLDLGNFDSP IDFDFFGLPS FRLLAKHGAE EFDEFDVDYF LLENQLEHPR SLMAEL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-40ERF family protein