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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G27950.1 | ||||||||
Common Name | CRF4, ERF066, T13J8.60 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 38447.6 Da PI: 4.358 | ||||||||
Description | cytokinin response factor 4 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 116 | 166 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp + r+r++lg+f taeeAa +++a+ kl+g AT4G27950.1 116 KKYRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFATAEEAAIVYDNAAIKLRG 166 59********.**********743...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.84E-34 | 116 | 176 | No hit | No description |
SMART | SM00380 | 1.1E-41 | 117 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-30 | 117 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.788 | 117 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-22 | 117 | 175 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.9E-13 | 117 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 118 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MMMDEFMDLR PVKYTEHKTV IRKYTKKSSM ERKTSVRDSA RLVRVSMTDR DATDSSSDEE 60 EFLFPRRRVK RLINEIRVEP SSSSTGDVSA SPTKDRKRIN VDSTVQKPSV SGQNQKKYRG 120 VRQRPWGKWA AEIRDPEQRR RIWLGTFATA EEAAIVYDNA AIKLRGPDAL TNFTVQPEPE 180 PVQEQEQEPE SNMSVSISES MDDSQHLSSP TSVLNYQTYV SEEPIDSLIK PVKQEFLEPE 240 QEPISWHLGE GNTNTNDDSF PLDITFLDNY FNESLPDISI FDQPMSPIQP TENDFFNDLM 300 LFDSNAEEYY SSEIKEIGSS FNDLDDSLIS DLLLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-21 | 116 | 176 | 1 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-21 | 116 | 176 | 4 | 65 | ATERF1 |
3gcc_A | 2e-21 | 116 | 176 | 4 | 65 | ATERF1 |
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Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 42567198 | 0.0 | ||||
Expression Atlas | AT4G27950 | - | ||||
AtGenExpress | AT4G27950 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | 27203113 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G27950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT4G27950, AT5G53290, AT1G22985, AT1G71130 | |||||
IntAct | Search Q9SUE3 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G27950 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL035524 | 0.0 | AL035524.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T13J8 (ESSAII project). | |||
GenBank | AL161572 | 0.0 | AL161572.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68. | |||
GenBank | BT033088 | 0.0 | BT033088.1 Arabidopsis thaliana unknown protein (At4g27950) mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_194524.2 | 0.0 | cytokinin response factor 4 | ||||
Swissprot | Q9SUE3 | 0.0 | CRF4_ARATH; Ethylene-responsive transcription factor CRF4 | ||||
TrEMBL | A0A178V2V5 | 0.0 | A0A178V2V5_ARATH; CRF4 | ||||
STRING | AT4G27950.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2229 | 25 | 76 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT4G27950.1 |
Entrez Gene | 828908 |
iHOP | AT4G27950 |
wikigenes | AT4G27950 |