PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019177336.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WOX
Protein Properties Length: 270aa    MW: 30378.8 Da    PI: 4.8554
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019177336.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.6e-2187147257
                     T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     r+R+t+t+ ql++Le+ F + n +ps+++++e+++ l    +++e++V++WFqNrRa+ k+
  XP_019177336.1  87 RQRWTPTPVQLQTLERIFDQgNGTPSKQKIKEITDDLsrhgQISETNVYNWFQNRRARSKR 147
                     89*****************99**************************************97 PP
2Wus_type_Homeobox97.11.4e-3187149365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        r+RWtPtp Q++ Le+++++G  tP+k++i++it  L+++G+i+++NV++WFQNr+aR+++kq
     XP_019177336.1  87 RQRWTPTPVQLQTLERIFDQGNGTPSKQKIKEITDDLSRHGQISETNVYNWFQNRRARSKRKQ 149
                        89***********************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MEWEKQQPPP PPPPTEDLGG GGMFVKVMTD EQMEVLRKQI AVYATICDQL VELHKSVASQ  60
HDLAGARLGN LYCDPLVTCA GHKLTGRQRW TPTPVQLQTL ERIFDQGNGT PSKQKIKEIT  120
DDLSRHGQIS ETNVYNWFQN RRARSKRKQQ VVSTNNIESE VETEVESQDD KVTTKPEEDL  180
QSSHIPTSRS EDVCYQNYEV SSAMHSVGTK TNKAESAFAS ESTPKPAGSF DQMSFYGLSN  240
PPRMDQLIGK MEVFESYNPY LEADEYNLTG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149RRARSKRKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.17e-84WOX family protein