PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019174566.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CAMTA

Protein Properties

Length: 908aa MW: 102663 Da PI: 7.9806

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019174566.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.8	2.9e-51	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e k+rwl+++ei+a+L n++ ++++ + + pk g++iL++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf r XP_019174566.1 30 DEaKTRWLRPNEIHAFLCNYKYFTVHVRPVNLPKGGTVILFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPTFVR 124 4559***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL+++le+ivlvhy+e++ XP_019174566.1 125 RCYWLLDKTLEHIVLVHYRETQ 146 *****************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence
MEYGVQGLLA GSDIHGFHTL EDLDVKTVMD EAKTRWLRPN EIHAFLCNYK YFTVHVRPVN 60 LPKGGTVILF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDNP 120 TFVRRCYWLL DKTLEHIVLV HYRETQEVQS SPATPSSALS DLSPPWVLTE GSESPIDCAN 180 YNRPLASLEP NDNMRIQNHR QTLHAINTLE WDELLGPDDP NKSRSAKASV GQQQQYETNG 240 FGLNGANLSA DELAVGSLEN LPGQMSISNS INFNIPNDVV PQTLNAQMTS YSQRIDFDNP 300 SKDGLQSQDS FGKWMNYMIA ADSPGSVDDP SLEPATGYQS FPSPSLDNNS SAQEHIFNIT 360 DVSPAWAFST EETKILVIGH FLGGQSQLAI SNLFCVCGDA RVPAEVIQSG VYRCLLSPQT 420 PGLVNLYLSF DGYNPISQVI TFEFRAPEIP KSTSTPSVVK PHWEELRAQM RLAHLLFATP 480 KSLNILSSKI PQDAQKGAKI FAHKCSHITS NWTHLTKSID NNQLSFPQAK DQLFELSLHT 540 KLQEWLLERI LEGCKIPERD EQGQSVIHLC AILGYTWAIY PYKWSGLSLD YRDKFGWTAL 600 HWAAYYGREK MVAVLLSAGA KPSMVTDPTT GNPSGCTAAD LASKNGYEGL GAYLAEKALV 660 AQFNEMTLAG NASGSLQPAS DSGNYGNTAE DMELKDTLAA YRTAADAAAR IQSAFREHSF 720 KLRKMQVESS TPESEARSII AAMKIQHAFR KYDTRKKIDA AARIQYRFRT WKIRKDFLNM 780 RRQATKIQSI FRGYQVRRQY RKIVWSVGVL EKAILRWRLK RKGFRGLQVA ETTDTTENQK 840 QDNDVVDEDF FRASRKQAEE RVERAVVRVQ AMFRSKKAQE EYRRMKLEHN TASLQYEEFL 900 DPTDTYMG

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence

MEYGVQGLLA GSDIHGFHTL EDLDVKTVMD EAKTRWLRPN EIHAFLCNYK YFTVHVRPVN  60
LPKGGTVILF DRKKLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNEERIH VYYAHGEDNP  120
TFVRRCYWLL DKTLEHIVLV HYRETQEVQS SPATPSSALS DLSPPWVLTE GSESPIDCAN  180
YNRPLASLEP NDNMRIQNHR QTLHAINTLE WDELLGPDDP NKSRSAKASV GQQQQYETNG  240
FGLNGANLSA DELAVGSLEN LPGQMSISNS INFNIPNDVV PQTLNAQMTS YSQRIDFDNP  300
SKDGLQSQDS FGKWMNYMIA ADSPGSVDDP SLEPATGYQS FPSPSLDNNS SAQEHIFNIT  360
DVSPAWAFST EETKILVIGH FLGGQSQLAI SNLFCVCGDA RVPAEVIQSG VYRCLLSPQT  420
PGLVNLYLSF DGYNPISQVI TFEFRAPEIP KSTSTPSVVK PHWEELRAQM RLAHLLFATP  480
KSLNILSSKI PQDAQKGAKI FAHKCSHITS NWTHLTKSID NNQLSFPQAK DQLFELSLHT  540
KLQEWLLERI LEGCKIPERD EQGQSVIHLC AILGYTWAIY PYKWSGLSLD YRDKFGWTAL  600
HWAAYYGREK MVAVLLSAGA KPSMVTDPTT GNPSGCTAAD LASKNGYEGL GAYLAEKALV  660
AQFNEMTLAG NASGSLQPAS DSGNYGNTAE DMELKDTLAA YRTAADAAAR IQSAFREHSF  720
KLRKMQVESS TPESEARSII AAMKIQHAFR KYDTRKKIDA AARIQYRFRT WKIRKDFLNM  780
RRQATKIQSI FRGYQVRRQY RKIVWSVGVL EKAILRWRLK RKGFRGLQVA ETTDTTENQK  840
QDNDVVDEDF FRASRKQAEE RVERAVVRVQ AMFRSKKAQE EYRRMKLEHN TASLQYEEFL  900
DPTDTYMG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	88	RKKLRNFRKDGHNWKKK
2	72	89	RKKLRNFRKDGHNWKKKK
3	73	89	RKKLRNFRKDGHNWKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	CAMTA family protein