PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_019170880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26038.8 Da PI: 8.8995 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72 | 5e-23 | 16 | 63 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie k qvtfskRr g++KKA+EL++LC++eva+i+fs+ gk++ + XP_019170880.1 16 KIEIKNHLQVTFSKRRSGLFKKASELCILCGVEVAIIVFSPAGKVFSF 63 67888889*************************************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MAKRPSMGRQ KIKIEKIEIK NHLQVTFSKR RSGLFKKASE LCILCGVEVA IIVFSPAGKV 60 FSFGHPNVDP IIDRFLSRNH HHPAAATSNA NANATLHLVE AHRSAAVREM NLQLTQMTAE 120 SEIERKRGEA LDLMRKESRS RCWWEAPVSE LRLPELEQLR DAMDELKKNV AAQAESIMAE 180 AVNTSTFLAM NGTAAAAGIF DPPETKPPQR IMANNTHNHH HALHDFGYDL AFS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-46 | M-type_MADS family protein |