PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019170190.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 570aa MW: 60849 Da PI: 8.3657

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019170190.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.2e-30	303	361	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ XP_019170190.1 303 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGTHNHP 361 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence
MDKGWGLTLE NPDRRAGFFT NKPVFGFNLS PRLNPINGGG SGGGAGMVPI NPAAEKRGPP 60 NEVDFFSDKK ADIVVKKEIT LHGEPVTKAD LNTGLQLVIA NSGSDKSTVD DSVSSDMEER 120 RAKNDLSVLQ VELEKMNAEN QRLRGMLSQV STNYTALQQH LSNLMQHQNQ QSSRIGSTQD 180 REVADRKSEE KKPEKEEPTV PRQFLELVPG GGAAAAAQTD EASQSHTTSE ERTLSAGSPR 240 NNNTELSRHK GIIAREDSPD SESWAPNKLP KLNPSKPVDQ AAEATMRKAR VSVRARSEAP 300 MISDGCQWRK YGQKMAKGNP CPRAYYRCTM AVGCPVRKQV QRCAEDRTIL ITTYEGTHNH 360 PLPPAAMAMA STTSAAANML LSGAMPSADG MMNTNFLARA ILPCSSSVAT ISASAPFPTV 420 TLDLTQTPNS LPNYQRPPTQ FQAPFTGAPQ IPQNYPQLPQ VFGQGLYNQS KFSGLHVSHQ 480 DIAAAAAQAA QLAQQQQHPA PPPQHPLFAD TLSAATAAIT SDPNFTAALA AAISSIMGGG 540 SQPNNANNAS NAAAATSTSN TNKTSSFPGN

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence

MDKGWGLTLE NPDRRAGFFT NKPVFGFNLS PRLNPINGGG SGGGAGMVPI NPAAEKRGPP  60
NEVDFFSDKK ADIVVKKEIT LHGEPVTKAD LNTGLQLVIA NSGSDKSTVD DSVSSDMEER  120
RAKNDLSVLQ VELEKMNAEN QRLRGMLSQV STNYTALQQH LSNLMQHQNQ QSSRIGSTQD  180
REVADRKSEE KKPEKEEPTV PRQFLELVPG GGAAAAAQTD EASQSHTTSE ERTLSAGSPR  240
NNNTELSRHK GIIAREDSPD SESWAPNKLP KLNPSKPVDQ AAEATMRKAR VSVRARSEAP  300
MISDGCQWRK YGQKMAKGNP CPRAYYRCTM AVGCPVRKQV QRCAEDRTIL ITTYEGTHNH  360
PLPPAAMAMA STTSAAANML LSGAMPSADG MMNTNFLARA ILPCSSSVAT ISASAPFPTV  420
TLDLTQTPNS LPNYQRPPTQ FQAPFTGAPQ IPQNYPQLPQ VFGQGLYNQS KFSGLHVSHQ  480
DIAAAAAQAA QLAQQQQHPA PPPQHPLFAD TLSAATAAIT SDPNFTAALA AAISSIMGGG  540
SQPNNANNAS NAAAATSTSN TNKTSSFPGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-118	WRKY family protein