PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169947.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 740aa MW: 85652.3 Da PI: 4.8447

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.6e-22	133	217	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etr gC a++++++ ++++w+v++++leHnH++ XP_019169947.1 133 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAS-----TRRKETRRGCLAMIRLRLVDSNRWRVDEVKLEHNHPFD 217 69**************************************98877.....8999*****************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 740 aa Download sequence
MEEGLENSEQ VIGDEISDHE VESEGVFDIE GNDLENDGDH ILMIDSNDLD NTAEQVLEFE 60 SSGHDNSEHV LEFGSTDEGH NTNQILEIQS NEPNCTDGDA TIFHDQDGGT SQKKSYLPPV 120 VGMEFESYED AYNYYNCYAK ELGFAIRVKS SWTKRNSKEK RGAVLCCNCE GFKTMKEAST 180 RRKETRRGCL AMIRLRLVDS NRWRVDEVKL EHNHPFDPER AQNCKSHKKM DSVAKRKLEP 240 AVDVEVRTIK LYRSPTVDTL NYGSSNERDV GNCIDASKRL KVNNGDFQLI CNFFSRMQLT 300 NPNFFYIMDL NDEGNVRNVF WIDSRSRTSY SYFGDVVLVD TTCLSKSYEI PLVVFFGVNH 360 HGEALLLGCG LLVDESFETY IWVLRAWLTC MSGRPPQTII TDRCKALQNA VSEVFPRAHH 420 CLCLSLVMQS IAETLVELEQ PELFYTVLNR VVYNSLKVDE FEIAWEEMVQ HFGISSHEWL 480 QKLYEDRERW APVYLKDTFF AGMSVSQPGV SASHFFEGFV HKETNLKEFF DIYELILQRK 540 HQKEALDDLE SKEFNPVLRT RCNYELRLSE MYTKEIFLSF QVEVALMSTC FSVSQIHTNA 600 PVITYMIKEQ DTAGDTRDER NYEVMYDRVG QDVRCMCSCF NFKGYLCRHA LCVLDHNGVE 660 EMPNQYILSR WRKDFKRLYS PDLGSNNIDI SNPVQWFDHL YRRALQVVEE GMASQDHYMV 720 AWQAFQESLN KVRLVADRHG

Sequence ? help Back to Top

Protein Sequence Length: 740 aa Download sequence

MEEGLENSEQ VIGDEISDHE VESEGVFDIE GNDLENDGDH ILMIDSNDLD NTAEQVLEFE  60
SSGHDNSEHV LEFGSTDEGH NTNQILEIQS NEPNCTDGDA TIFHDQDGGT SQKKSYLPPV  120
VGMEFESYED AYNYYNCYAK ELGFAIRVKS SWTKRNSKEK RGAVLCCNCE GFKTMKEAST  180
RRKETRRGCL AMIRLRLVDS NRWRVDEVKL EHNHPFDPER AQNCKSHKKM DSVAKRKLEP  240
AVDVEVRTIK LYRSPTVDTL NYGSSNERDV GNCIDASKRL KVNNGDFQLI CNFFSRMQLT  300
NPNFFYIMDL NDEGNVRNVF WIDSRSRTSY SYFGDVVLVD TTCLSKSYEI PLVVFFGVNH  360
HGEALLLGCG LLVDESFETY IWVLRAWLTC MSGRPPQTII TDRCKALQNA VSEVFPRAHH  420
CLCLSLVMQS IAETLVELEQ PELFYTVLNR VVYNSLKVDE FEIAWEEMVQ HFGISSHEWL  480
QKLYEDRERW APVYLKDTFF AGMSVSQPGV SASHFFEGFV HKETNLKEFF DIYELILQRK  540
HQKEALDDLE SKEFNPVLRT RCNYELRLSE MYTKEIFLSF QVEVALMSTC FSVSQIHTNA  600
PVITYMIKEQ DTAGDTRDER NYEVMYDRVG QDVRCMCSCF NFKGYLCRHA LCVLDHNGVE  660
EMPNQYILSR WRKDFKRLYS PDLGSNNIDI SNPVQWFDHL YRRALQVVEE GMASQDHYMV  720
AWQAFQESLN KVRLVADRHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1 family protein