PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019169944.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 768aa MW: 88520.4 Da PI: 4.7714

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019169944.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.9	5.9e-22	161	245	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etr gC a++++++ ++++w+v++++leHnH++ XP_019169944.1 161 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAS-----TRRKETRRGCLAMIRLRLVDSNRWRVDEVKLEHNHPFD 245 69**************************************98877.....8999*****************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 768 aa Download sequence
MFSAMMADGS SFSPAGDGLS PNHDLEITME EGLENSEQVI GDEISDHEVE SEGVFDIEGN 60 DLENDGDHIL MIDSNDLDNT AEQVLEFESS GHDNSEHVLE FGSTDEGHNT NQILEIQSNE 120 PNCTDGDATI FHDQDGGTSQ KKSYLPPVVG MEFESYEDAY NYYNCYAKEL GFAIRVKSSW 180 TKRNSKEKRG AVLCCNCEGF KTMKEASTRR KETRRGCLAM IRLRLVDSNR WRVDEVKLEH 240 NHPFDPERAQ NCKSHKKMDS VAKRKLEPAV DVEVRTIKLY RSPTVDTLNY GSSNERDVGN 300 CIDASKRLKV NNGDFQLICN FFSRMQLTNP NFFYIMDLND EGNVRNVFWI DSRSRTSYSY 360 FGDVVLVDTT CLSKSYEIPL VVFFGVNHHG EALLLGCGLL VDESFETYIW VLRAWLTCMS 420 GRPPQTIITD RCKALQNAVS EVFPRAHHCL CLSLVMQSIA ETLVELEQPE LFYTVLNRVV 480 YNSLKVDEFE IAWEEMVQHF GISSHEWLQK LYEDRERWAP VYLKDTFFAG MSVSQPGVSA 540 SHFFEGFVHK ETNLKEFFDI YELILQRKHQ KEALDDLESK EFNPVLRTRC NYELRLSEMY 600 TKEIFLSFQV EVALMSTCFS VSQIHTNAPV ITYMIKEQDT AGDTRDERNY EVMYDRVGQD 660 VRCMCSCFNF KGYLCRHALC VLDHNGVEEM PNQYILSRWR KDFKRLYSPD LGSNNIDISN 720 PVQWFDHLYR RALQVVEEGM ASQDHYMVAW QAFQESLNKV RLVADRHG

Sequence ? help Back to Top

Protein Sequence Length: 768 aa Download sequence

MFSAMMADGS SFSPAGDGLS PNHDLEITME EGLENSEQVI GDEISDHEVE SEGVFDIEGN  60
DLENDGDHIL MIDSNDLDNT AEQVLEFESS GHDNSEHVLE FGSTDEGHNT NQILEIQSNE  120
PNCTDGDATI FHDQDGGTSQ KKSYLPPVVG MEFESYEDAY NYYNCYAKEL GFAIRVKSSW  180
TKRNSKEKRG AVLCCNCEGF KTMKEASTRR KETRRGCLAM IRLRLVDSNR WRVDEVKLEH  240
NHPFDPERAQ NCKSHKKMDS VAKRKLEPAV DVEVRTIKLY RSPTVDTLNY GSSNERDVGN  300
CIDASKRLKV NNGDFQLICN FFSRMQLTNP NFFYIMDLND EGNVRNVFWI DSRSRTSYSY  360
FGDVVLVDTT CLSKSYEIPL VVFFGVNHHG EALLLGCGLL VDESFETYIW VLRAWLTCMS  420
GRPPQTIITD RCKALQNAVS EVFPRAHHCL CLSLVMQSIA ETLVELEQPE LFYTVLNRVV  480
YNSLKVDEFE IAWEEMVQHF GISSHEWLQK LYEDRERWAP VYLKDTFFAG MSVSQPGVSA  540
SHFFEGFVHK ETNLKEFFDI YELILQRKHQ KEALDDLESK EFNPVLRTRC NYELRLSEMY  600
TKEIFLSFQV EVALMSTCFS VSQIHTNAPV ITYMIKEQDT AGDTRDERNY EVMYDRVGQD  660
VRCMCSCFNF KGYLCRHALC VLDHNGVEEM PNQYILSRWR KDFKRLYSPD LGSNNIDISN  720
PVQWFDHLYR RALQVVEEGM ASQDHYMVAW QAFQESLNKV RLVADRHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1 family protein