PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019168834.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LFY
Protein Properties Length: 416aa    MW: 45841.7 Da    PI: 6.9893
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019168834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY646.44e-19713941386
         FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap.....leaaaaaaarklr........eleelfkayGvryltvakiaelGftvstLvdmk 82 
                     mdp+afs+slfkw+praa+ +pp+rlle aa+s++p     ++a a+aa++++r        +leelf+ayG+ry+t+akiaelGftv+tL+dmk
  XP_019168834.1   1 MDPDAFSSSLFKWEPRAAM-PPPSRLLEAAAASAHPppqlhAAAVASAASYSVRtrpelglgGLEELFQAYGIRYYTAAKIAELGFTVNTLLDMK 94 
                     9**************9877.67778877777666654554333333444445558899***9********************************* PP

         FLO_LFY  83 deelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqe.ekeaagsggeglgeaelvaa 176
                     ++e+dd+m+sls+ifr+dllvGeryGikaavraerrrleee+   +rr+lls d ++aldalsqeglsee vq+ ekea+gsgg+g g++e+vaa
  XP_019168834.1  95 EDEIDDMMTSLSHIFRWDLLVGERYGIKAAVRAERRRLEEED--LRRRHLLSGDGTNALDALSQEGLSEEGVQQhEKEAVGSGGGG-GAWEVVAA 186
                     ****************************************88..89999*********************9999566778887777.99***999 PP

         FLO_LFY 177 eekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiak 271
                     ++  + ++++++s  k+ r    +  +ee+ ++e +e+++e ++g + +erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iak
  XP_019168834.1 187 AAGGKAKQRRRKSVGKAARTGGGS--MEEEYETEGQEEDEEGDGGGGISERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAK 279
                     975554444444444554444444..44556666666666667777778********************************************** PP

         FLO_LFY 272 erGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLs 366
                     erGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaa q+wdida+fnahprLs
  XP_019168834.1 280 ERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVAIAALQAWDIDAIFNAHPRLS 374
                     *********************************************************************************************** PP

         FLO_LFY 367 iWYvPtkLrqLChlerskas 386
                     iWYvPtkLrqLCh+erskas
  XP_019168834.1 375 IWYVPTKLRQLCHAERSKAS 394
                     *****************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    
MDPDAFSSSL FKWEPRAAMP PPSRLLEAAA ASAHPPPQLH AAAVASAASY SVRTRPELGL  60
GGLEELFQAY GIRYYTAAKI AELGFTVNTL LDMKEDEIDD MMTSLSHIFR WDLLVGERYG  120
IKAAVRAERR RLEEEDLRRR HLLSGDGTNA LDALSQEGLS EEGVQQHEKE AVGSGGGGGA  180
WEVVAAAAGG KAKQRRRKSV GKAARTGGGS MEEEYETEGQ EEDEEGDGGG GISERQREHP  240
FIVTEPGEVA RGKKNGLDYL FHLYEQCREF LIQVQNIAKE RGEKCPTKVT NQVFRYAKKA  300
GASYINKPKM RHYVHCYALH CLDEEASNAL RRAFKERGEN VGAWRQACYK PLVAIAALQA  360
WDIDAIFNAH PRLSIWYVPT KLRQLCHAER SKASAPTSSS VSVSIPATAC SHLPLF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199QRRRKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-108LFY family protein