PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019165044.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 499aa MW: 54654.6 Da PI: 6.041

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019165044.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.3e-13	353	399	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_019165044.1 353 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITDLQ 399 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MGDKFCVDDS DRALVEGVLG RHAVDFFTWS ASNNVLSDFV ASSGSLGVQR ELCKIVEDSD 60 WAYAIYWQVA KSKSGKSALI WGDGHCSELN RRLGEEMNVN QTLVNGDKKK QVLRKICGCF 120 GGSEEDNVGN KLDFVSDMEM FYLTSMYYVF PFGVPSSPSQ SFNSSRTIWA ADARSCSENY 180 QSRSHLAKLA KFETLVFVPL KFGVVELGST KAIPEDQNVI KMVQKMVVVS AHAPAKPIPK 240 IFGQELSLGG AKSSSGPISI SFAPKLEEEL GGHPSDSYDI NALGSSQVYG NSSNGYRSDD 300 GDGKLLPGVN QVMVGALNSG FEQASEDALL QPDVQKPRKR GRKPANGREE PLNHVEAERQ 360 RREKLNQRFY ALRAVVPNIS KMDKASLLGD AIAYITDLQA RVRTMEAERE IPTNQPKPLS 420 VQDIEFHQRA DDAVISVGCP LDTHPISRVI KAFQEHQVTA QESSVAISEN GEVIHTFSIQ 480 TQGAPAEEMK EKLAAALAK

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MGDKFCVDDS DRALVEGVLG RHAVDFFTWS ASNNVLSDFV ASSGSLGVQR ELCKIVEDSD  60
WAYAIYWQVA KSKSGKSALI WGDGHCSELN RRLGEEMNVN QTLVNGDKKK QVLRKICGCF  120
GGSEEDNVGN KLDFVSDMEM FYLTSMYYVF PFGVPSSPSQ SFNSSRTIWA ADARSCSENY  180
QSRSHLAKLA KFETLVFVPL KFGVVELGST KAIPEDQNVI KMVQKMVVVS AHAPAKPIPK  240
IFGQELSLGG AKSSSGPISI SFAPKLEEEL GGHPSDSYDI NALGSSQVYG NSSNGYRSDD  300
GDGKLLPGVN QVMVGALNSG FEQASEDALL QPDVQKPRKR GRKPANGREE PLNHVEAERQ  360
RREKLNQRFY ALRAVVPNIS KMDKASLLGD AIAYITDLQA RVRTMEAERE IPTNQPKPLS  420
VQDIEFHQRA DDAVISVGCP LDTHPISRVI KAFQEHQVTA QESSVAISEN GEVIHTFSIQ  480
TQGAPAEEMK EKLAAALAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-136	bHLH family protein