PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160356.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 371aa MW: 40306.1 Da PI: 7.1333

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16	2.5e-05	32	64	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ ++ + fC+ + ++C +C + H XP_019160356.1 32 KPCDYCKVAVALVFCRVDAIFMCLECDAKVHAT 64 68***999***************999954 PP
2	zf-B_box	25.7	2.4e-08	74	119	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ XP_019160356.1 74 VWVCEVCEHAPAAVTCKADAAALCVTCDRDIHSAnplaqrHERVPV 119 689*****************************66899999999986 PP
3	CCT	69.7	7.4e-24	297	340	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_019160356.1 297 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 340 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MVIANCGGGG GSDSVINSRC LSGGWGAAAA AKPCDYCKVA VALVFCRVDA IFMCLECDAK 60 VHATNKLGSK HARVWVCEVC EHAPAAVTCK ADAAALCVTC DRDIHSANPL AQRHERVPVA 120 PFYDTAESVV KSTAATLLVP MNDSNPPNFA HDNFASDPWT SSASITSSKL PENAAGGMKS 180 AEFSLFDSDN FLDFEYPVSW ESNSHQNQYN SDRVVPIQTI KTSAPIIPQE KHFEIDFTRS 240 NLTSYNSGFT KPSLSVSSSL DVGVVPDGSS VSEISYRNIG GGSVDSRGGS QWNGMDREAR 300 VLRYREKRKN RKFEKTIRYA SRKAYAETRP RIKGRFAKRT EVESESDIDT LFSSADSAAD 360 VGRFSVVPLI W

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MVIANCGGGG GSDSVINSRC LSGGWGAAAA AKPCDYCKVA VALVFCRVDA IFMCLECDAK  60
VHATNKLGSK HARVWVCEVC EHAPAAVTCK ADAAALCVTC DRDIHSANPL AQRHERVPVA  120
PFYDTAESVV KSTAATLLVP MNDSNPPNFA HDNFASDPWT SSASITSSKL PENAAGGMKS  180
AEFSLFDSDN FLDFEYPVSW ESNSHQNQYN SDRVVPIQTI KTSAPIIPQE KHFEIDFTRS  240
NLTSYNSGFT KPSLSVSSSL DVGVVPDGSS VSEISYRNIG GGSVDSRGGS QWNGMDREAR  300
VLRYREKRKN RKFEKTIRYA SRKAYAETRP RIKGRFAKRT EVESESDIDT LFSSADSAAD  360
VGRFSVVPLI W

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	2e-91	CO-like family protein