PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019160354.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CO-like

Protein Properties

Length: 385aa MW: 41672.6 Da PI: 7.1663

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019160354.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.6	2.5e-08	88	133	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ XP_019160354.1 88 VWVCEVCEHAPAAVTCKADAAALCVTCDRDIHSAnplaqrHERVPV 133 689*****************************66899999999986 PP
2	CCT	69.6	7.8e-24	311	354	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_019160354.1 311 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 354 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MVIANCGGGG DSVIHSRGLP GSCGGSDSVI NSRCLSGGWG AAAAAKPCDY CKVAVALVFC 60 RVDAIFMCLE CDAKVHATNK LGSKHARVWV CEVCEHAPAA VTCKADAAAL CVTCDRDIHS 120 ANPLAQRHER VPVAPFYDTA ESVVKSTAAT LLVPMNDSNP PNFAHDNFAS DPWTSSASIT 180 SSKLPENAAG GMKSAEFSLF DSDNFLDFEY PVSWESNSHQ NQYNSDRVVP IQTIKTSAPI 240 IPQEKHFEID FTRSNLTSYN SGFTKPSLSV SSSLDVGVVP DGSSVSEISY RNIGGGSVDS 300 RGGSQWNGMD REARVLRYRE KRKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRTEVESES 360 DIDTLFSSAD SAADVGRFSV VPLIW

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MVIANCGGGG DSVIHSRGLP GSCGGSDSVI NSRCLSGGWG AAAAAKPCDY CKVAVALVFC  60
RVDAIFMCLE CDAKVHATNK LGSKHARVWV CEVCEHAPAA VTCKADAAAL CVTCDRDIHS  120
ANPLAQRHER VPVAPFYDTA ESVVKSTAAT LLVPMNDSNP PNFAHDNFAS DPWTSSASIT  180
SSKLPENAAG GMKSAEFSLF DSDNFLDFEY PVSWESNSHQ NQYNSDRVVP IQTIKTSAPI  240
IPQEKHFEID FTRSNLTSYN SGFTKPSLSV SSSLDVGVVP DGSSVSEISY RNIGGGSVDS  300
RGGSQWNGMD REARVLRYRE KRKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRTEVESES  360
DIDTLFSSAD SAADVGRFSV VPLIW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	9e-91	CO-like family protein