PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019157540.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 423aa MW: 47175.9 Da PI: 4.8414

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019157540.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	51.4	2.7e-16	54	113	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+ng k+ k+++lg ++++e Aa+ ++ a++k++g XP_019157540.1 54 SIYRGVTRHRWSGRYEAHLWDkNSWNGnksKKgKQVYLGAYDSEEAAARTYDLAALKYWG 113 57*****************888877778557***********************98 PP
2	AP2	54.1	3.9e-17	156	207	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I ++ +k+ +lg++gt eeAa+a++ a+ +++g XP_019157540.1 156 SKYRGVARHHQNGRWEARIGLVYG---SKYLYLGTYGTQEEAAAAYDMAAIEFKG 207 89*****************543...5********************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MEKSPPSSSL SSSSSCIEPN NDSAMPKPDT QTGHKRSRAK KAPNPAPTAA RKSSIYRGVT 60 RHRWSGRYEA HLWDKNSWNG NKSKKGKQVY LGAYDSEEAA ARTYDLAALK YWGPKATINF 120 PVETYSKELE EMQKLSREEF LASLRRQSSG FSRGVSKYRG VARHHQNGRW EARIGLVYGS 180 KYLYLGTYGT QEEAAAAYDM AAIEFKGPGA VTNFDISNYG DKLKEIRERG QTRRNLANNA 240 ESSAEVQSGD QRDPNQEIED GDEMQQNERV EGHSVTFDEE IQPDELLLDP YPKNVESLQP 300 EILKLEDPGK EHDEHPWNLC MGVGFEAFPV SNIDLEVKPP SLDFFNDSSF DDEIDLVFGK 360 RVRGSDEFKQ DDVFGSMLMD DEFEAKAVVK GQEVTASDYS SSVSTSVSVS SEVGGLASSN 420 LLN

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MEKSPPSSSL SSSSSCIEPN NDSAMPKPDT QTGHKRSRAK KAPNPAPTAA RKSSIYRGVT  60
RHRWSGRYEA HLWDKNSWNG NKSKKGKQVY LGAYDSEEAA ARTYDLAALK YWGPKATINF  120
PVETYSKELE EMQKLSREEF LASLRRQSSG FSRGVSKYRG VARHHQNGRW EARIGLVYGS  180
KYLYLGTYGT QEEAAAAYDM AAIEFKGPGA VTNFDISNYG DKLKEIRERG QTRRNLANNA  240
ESSAEVQSGD QRDPNQEIED GDEMQQNERV EGHSVTFDEE IQPDELLLDP YPKNVESLQP  300
EILKLEDPGK EHDEHPWNLC MGVGFEAFPV SNIDLEVKPP SLDFFNDSSF DDEIDLVFGK  360
RVRGSDEFKQ DDVFGSMLMD DEFEAKAVVK GQEVTASDYS SSVSTSVSVS SEVGGLASSN  420
LLN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-86	AP2 family protein