PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6BG070380.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 360aa MW: 37505.6 Da PI: 8.276

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6BG070380.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00061	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H TRIDC6BG070380.2 140 YECKTCNKCFPTFQALGGHRASH 162 99**********99999998887 PP
2	zf-C2H2	11.6	0.00084	243	265	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H TRIDC6BG070380.2 243 HECSICGAEFASGQALGGHMRRH 265 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MELVLFREEG AVDDRLQQHG GAVVKRKRTK RPRHLTPPAA AMACSSASSS ESTTTEEEDM 60 AHCLILLAQG AAPPGVVVDS RPPPATVPQE ARQGASSLPP PGPLPAPAVM STTKTERYTS 120 RKYTEAATTA DGVRAGFYVY ECKTCNKCFP TFQALGGHRA SHKKPRLAGA DDDTAANATS 180 VAIAKLSKPP PTKPPLVQMT TASPPQPPPP QVDAAPDVTT VLSLNNGGSA VCNAVNTNRL 240 RVHECSICGA EFASGQALGG HMRRHRPLHA PADRVTTTTA AAVTAITAST TKKDSTPAGI 300 NLELDLNLPA PSDEECVSHP PPPPPPSSAP PVVLGLGPFD SGKKRLMLTA ASAALVDCHY

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MELVLFREEG AVDDRLQQHG GAVVKRKRTK RPRHLTPPAA AMACSSASSS ESTTTEEEDM  60
AHCLILLAQG AAPPGVVVDS RPPPATVPQE ARQGASSLPP PGPLPAPAVM STTKTERYTS  120
RKYTEAATTA DGVRAGFYVY ECKTCNKCFP TFQALGGHRA SHKKPRLAGA DDDTAANATS  180
VAIAKLSKPP PTKPPLVQMT TASPPQPPPP QVDAAPDVTT VLSLNNGGSA VCNAVNTNRL  240
RVHECSICGA EFASGQALGG HMRRHRPLHA PADRVTTTTA AAVTAITAST TKKDSTPAGI  300
NLELDLNLPA PSDEECVSHP PPPPPPSSAP PVVLGLGPFD SGKKRLMLTA ASAALVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	5e-35	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC6BG070380.2