PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG059390.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 362aa MW: 37741.8 Da PI: 8.4226

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG059390.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00062	139	161	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k+F++ L H +H TRIDC6AG059390.1 139 YECKTCNKCFPTFQALGGHRASH 161 99**********99999998887 PP
2	zf-C2H2	11.6	0.00085	245	267	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H TRIDC6AG059390.1 245 HECSICGAEFASGQALGGHMRRH 267 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MELVLFREEG AVDDRLQQRG GAVVKRKRTK RPRHQTPPVA AMACSSASSS ESTTTEEEDM 60 AHCLILLAQG AAPPGVVVDS RPPPATVPQE ARQGTSSLPP AGPLPPPAVV SAKTERYTSR 120 KYTEAATTAD GVRAGFYVYE CKTCNKCFPT FQALGGHRAS HKKPRLAGAD DDSAANATSV 180 AIAKLSKPPS TKTATPPLVQ MTTASPPPPP PPQVDAAPDV TTVLSLNNGG NAVCHAVNTN 240 RLRVHECSIC GAEFASGQAL GGHMRRHRPL HAPADRAIAT TAVTAIAAST TKKEKDSTPA 300 GINLELDLNL PAPSDEECVS HPPPPPPPSS APPVVLGLGP FDSGKKRLML TAASAALVDC 360 HY

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MELVLFREEG AVDDRLQQRG GAVVKRKRTK RPRHQTPPVA AMACSSASSS ESTTTEEEDM  60
AHCLILLAQG AAPPGVVVDS RPPPATVPQE ARQGTSSLPP AGPLPPPAVV SAKTERYTSR  120
KYTEAATTAD GVRAGFYVYE CKTCNKCFPT FQALGGHRAS HKKPRLAGAD DDSAANATSV  180
AIAKLSKPPS TKTATPPLVQ MTTASPPPPP PPQVDAAPDV TTVLSLNNGG NAVCHAVNTN  240
RLRVHECSIC GAEFASGQAL GGHMRRHRPL HAPADRAIAT TAVTAIAAST TKKEKDSTPA  300
GINLELDLNL PAPSDEECVS HPPPPPPPSS APPVVLGLGP FDSGKKRLML TAASAALVDC  360
HY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-36	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG059390.1