PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC6AG032360.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 535aa MW: 58897.6 Da PI: 4.9911

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC6AG032360.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	99.2	6e-31	55	198	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+P+d+el+ e+L++k+ + +e+i++v+ i++++P++Lp ++++ ++ +fF++ +++y g+rk+r TRIDC6AG032360.4 55 LPAGVKFDPSDQELL-EHLEEKIGVGGskphmfI--DEFIPTVEndagICYSHPENLP-GTNKDGSSAHFFHSISNAYGCGQRKRRRisssdr 143 799**********.99876554555332..333444422344******.556677899*************97578888 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge..ktdWvmheyrl 128 ++ +W++tgk+k+v++ +g +g kk+Lv+ykg++ g+ ktdWvmh+y+l TRIDC6AG032360.4 144 ttsDEHVRWHKTGKSKPVYD-NGVMKGWKKILVLYKGSQTGGKpdKTDWVMHQYHL 198 75444889********.999*******9987766555*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence
CRSWLITCRG VAKKVRNAHC SNRQISEVGA EACRECPNCK HIIDNSDVSI QWPGLPAGVK 60 FDPSDQELLE HLEEKIGVGG SKPHMFIDEF IPTVENDAGI CYSHPENLPG TNKDGSSAHF 120 FHSISNAYGC GQRKRRRISS SDRTTSDEHV RWHKTGKSKP VYDNGVMKGW KKILVLYKGS 180 QTGGKPDKTD WVMHQYHLGV EENEKVGEFV VSKIFYQLKT RPVDKSEAEM ANEESTAFTA 240 SICPKTPMTK IPPCRPKNSP CETEQNDPGQ EEETVSLAEN ANNPAWCALS SQPVEVALEA 300 GTCSLDKSLR HHEVLDSSNL ENSTFGRPIL SQLMNETLNK NLCALHGLPD LHNVNLGTAP 360 TDLQITKGEN VSLVADAENT ACCSLASQDV EVTSQAGTSL VESLLHHEVS DLHNANLGTP 420 RDLQIAKEES VSLVDEAEKW CGLASQAVDV AFHAGTSLDE SLRCHEVLDS FDHEKSLTFD 480 RPIYSQGRDG GLENNLYSLN GLPDLQGVDF GTPIDDLQGL QFYSQESLGS WLERM

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence

CRSWLITCRG VAKKVRNAHC SNRQISEVGA EACRECPNCK HIIDNSDVSI QWPGLPAGVK  60
FDPSDQELLE HLEEKIGVGG SKPHMFIDEF IPTVENDAGI CYSHPENLPG TNKDGSSAHF  120
FHSISNAYGC GQRKRRRISS SDRTTSDEHV RWHKTGKSKP VYDNGVMKGW KKILVLYKGS  180
QTGGKPDKTD WVMHQYHLGV EENEKVGEFV VSKIFYQLKT RPVDKSEAEM ANEESTAFTA  240
SICPKTPMTK IPPCRPKNSP CETEQNDPGQ EEETVSLAEN ANNPAWCALS SQPVEVALEA  300
GTCSLDKSLR HHEVLDSSNL ENSTFGRPIL SQLMNETLNK NLCALHGLPD LHNVNLGTAP  360
TDLQITKGEN VSLVADAENT ACCSLASQDV EVTSQAGTSL VESLLHHEVS DLHNANLGTP  420
RDLQIAKEES VSLVDEAEKW CGLASQAVDV AFHAGTSLDE SLRCHEVLDS FDHEKSLTFD  480
RPIYSQGRDG GLENNLYSLN GLPDLQGVDF GTPIDDLQGL QFYSQESLGS WLERM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	137	RKRRR
2	133	159	RKRRRISSSDRTTSDEHVRWHKTGKSK
3	134	138	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	4e-78	NAC family protein

Link Out ? help Back to Top
Ensembl	TRIDC6AG032360.4