PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC5BG071210.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19245.8 Da    PI: 10.0525
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC5BG071210.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.22.6e-192262545
                      SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
            SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                      +k  rqvtfskRr+g++KK +EL  LC+a+vav++fs+ g+
  TRIDC5BG071210.1 22 DKNSRQVTFSKRRAGLFKKCSELALLCGARVAVVVFSEAGN 62
                      5788**********************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    
MVRPRGTTST GRHRIEMSLR PDKNSRQVTF SKRRAGLFKK CSELALLCGA RVAVVVFSEA  60
GNAFALGSPS MEAVLRRFDD GNDAGALVPA ADVDDREALE ELYRAREATA EQVASEIKRM  120
NTIGDTVVKA QTGRRYWWEA DVEALGEAEL PEFARALDRL RANVRRHANK LRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-26M-type_MADS family protein