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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5AG058980.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | MYB | ||||||||
| Protein Properties | Length: 311aa MW: 34302.9 Da PI: 8.15 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 48.9 | 1.5e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEd l+ +++q G+g +W + ++++g++R++k+c++rw++yl
TRIDC5AG058980.1 14 KGPWSPEEDATLKSYIEQNGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62
79*********************************************97 PP
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| 2 | Myb_DNA-binding | 37.6 | 5e-12 | 70 | 111 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
++ eEd +++ + G++ W+ Ia+ ++ gRt++++k++w++
TRIDC5AG058980.1 70 GFSDEEDRIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
699*****************.*********.***********97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 311 aa Download sequence |
MGRAPCCDKA SVKKGPWSPE EDATLKSYIE QNGTGGNWIA LPQKIGLRRC GKSCRLRWLN 60 YLRPNIRHGG FSDEEDRIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLFGK 120 QSRKDQRQHQ FARQATNSGH KEEASEGAAG NNGFAAGAYN WHQHAMAMPS RPMPVSMVEG 180 NRIGEGVDES IRKLLFKLGG SSFAALQAPP CLPPPMYGEA PNFVAPSVHT APLNEGGIHC 240 SGMLPALELD ESFQFNQVKL DGLECFFGMG DQSMRWNEVS PLVCPNTTVA SSSQGMQQYC 300 LAEEPVDLGM Q |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G57620.1 | 1e-79 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5AG058980.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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