PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4BG047950.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 157aa MW: 18100.8 Da PI: 10.5073 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.8 | 1.2e-27 | 50 | 99 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+ rqvtf+kRrng+lKKA+ELS LCdaeva++ifs g+l+e+ss TRIDC4BG047950.5 50 RIENKTTRQVTFTKRRNGLLKKAYELSLLCDAEVALVIFSGGGRLFEFSS 99 8***********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence |
VRERERLEHR ASKAYDQTSL CWRQEVTGER ERKGGRGRRK MGRGKVEIRR IENKTTRQVT 60 FTKRRNGLLK KAYELSLLCD AEVALVIFSG GGRLFEFSSS SWYVTKPTLS VHLLFPSLLV 120 SLDLCVRQDL VKQNSDFLAF SSINQEHEKT SLFCVTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 9e-26 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4BG047950.5 |