PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC4AG008870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 687aa MW: 73887 Da PI: 6.66 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.9 | 2.2e-28 | 206 | 259 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl TRIDC4AG008870.1 206 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 259 79*******************.********************************8 PP | |||||||
2 | Myb_DNA-binding | 39.6 | 1.2e-12 | 208 | 258 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v+av+ lG + +k+I + m+ g+t++++ s++qk++ TRIDC4AG008870.1 208 RVVWSVELHQQFVNAVNHLGIDkaVPKKILELMNvPGLTRENVASHLQKFR 258 678**********************************************97 PP | |||||||
3 | Response_reg | 76.7 | 8.6e-26 | 22 | 130 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 vl+vdD+++ + +l+++l + +y +++++++++ al++l+e++ +D+i+ D+ mp+m+G++ll+ e++lp+i+++a + +++ + +k TRIDC4AG008870.1 22 VLVVDDDQTCLAVLKRMLVQCRY-DATTCSQATRALAMLRENRgaFDVIISDVHMPDMNGFRLLELVGL-EMDLPVIMMSADSRTDLVMKGIK 112 89*********************.*****************9999*******************87754.558******************** PP TTESEEEESS--HHHHHH CS Response_reg 92 aGakdflsKpfdpeelvk 109 Ga d+l Kp+ +eel + TRIDC4AG008870.1 113 HGACDYLIKPVRMEELKN 130 ***************986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 687 aa Download sequence |
AGVMAPPEEA GGGDQFPVGM KVLVVDDDQT CLAVLKRMLV QCRYDATTCS QATRALAMLR 60 ENRGAFDVII SDVHMPDMNG FRLLELVGLE MDLPVIMMSA DSRTDLVMKG IKHGACDYLI 120 KPVRMEELKN IWQHVVRKKF GGSKEHEHSG SLDDTDRNRL TNNDNEYASS ANDGAEDSWK 180 SQKKKRDKEE DDSELESGDP SNNSKKPRVV WSVELHQQFV NAVNHLGIDK AVPKKILELM 240 NVPGLTRENV ASHLQKFRLY LKRIAQHHAG MANPYSVPAS SAQVASLGGL DFQALAASGQ 300 IPPQALAALQ DELLGRPTNS LVLPGRDQSS LRLAAVKGNK PHGEQIAFGQ PIYKVQNNSY 360 AALPQNSSAV GRMPSFSAWP NNKLGMSDSM SALGHVNNSQ NSNMVLHELQ QQPDTMLSGT 420 LHTLDVKPSG IVMPSQSLNT FPASEGLSPN QNSLIIPSQS SGFLTGIPPS MKPELVLPTS 480 QSSNSLLGGI DLINQASTSQ PFISSHGGNL PGLMNRNSNV MPSQGISSFQ TGNTPYLVNQ 540 NSMGMGSKPP GVLKTESTDS LNQNYAYANH MDSGLLSSQS KNAQFGFLQS PNDITGGWSS 600 LQNMDGYRNT VGPSQPVSSS SSFQSSNAAL GKLPDQGRGK NLGFVGKGTC IPNRFAVDEI 660 ESPTNSLSHS IGSSGDIPDM FGFSGQM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-107 | ARR-B family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC4AG008870.1 |