PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG087210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 181aa MW: 19443.1 Da PI: 6.0497 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.1 | 1.8e-21 | 22 | 69 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ie++ rqv fskRr+g++KKA+EL vLC+aeva ++fs+ gk + + TRIDC3BG087210.1 22 KIESEEARQVCFSKRRAGLFKKASELAVLCGAEVAAVVFSPAGKAFSF 69 69*****************************************97766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence |
TATATAPQRR ASMGRQKIEI RKIESEEARQ VCFSKRRAGL FKKASELAVL CGAEVAAVVF 60 SPAGKAFSFG HPSVEAILDR FVPSAAQQPG AVVPGAGLGA AGDRNLAELN RQYGELRTQL 120 EAEKARKERA EEAMAKERAA ENQMAAWLDA DLRDMGEEEL MAFAAALVEV QAAVSERANQ 180 V |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-32 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG087210.1 |