PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G09562

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

M-type_MADS

Protein Properties

Length: 1379aa MW: 154683 Da PI: 6.7412

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G09562	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	47	3.2e-15	1167	1209	3	45
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i sn qvtfsk g++ KA+EL++LC++e+ +i+fs+ +k Ro07_G09562 1167 IPKRSNLQVTFSKHCSGLFTKASELCTLCGVEIVIIVFSPANK 1209 667899**********************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1379 aa Download sequence
MGVGAEEAQF HVLAVDDSII DRKLIERLLK TSSYQVTAVD SGSKALEFLG LNDQDDQSTI 60 AEAPSVSPNN QHQDVDVNLI ITDYCMPGMT GYDLLKKIKE SKSLKDIPVV IMSSENEPSR 120 INRCLEEGAE EFFLKPVKLS DVHKLRPHMI KGTSMEDEAD IKGGEEIQSP EKTRTQYNGF 180 DVPMTAFRSK RLVNFHLNPP SFIDARIIKT GFDPNTFRSN FQLNNLLKRG EVSNARQVFE 240 KMPQRNTFSI NMMISSYVNC GCLSKARELL DCMVDRTAVT WTILIGGYSQ ASQYREAFKL 300 YAQMHRWGTK PDYVTFATLL SGCSNMDATK ELVQVHSHIL KLGYHSTLKV SNSLVDSYCK 360 SHRLDFAFRL FKEMPERDAV TFNALITGYS KDGLNEDAIN LFAEMRNLGY KPSEFTFAAL 420 LCAGIGLDDI VFGQQVHGLV VKTNFVWNVF VGNALLDFYS KHDYAVKARK LFDEMPQLDC 480 ISYNVIISCY VWDGQFKEAL DLFHELQFTK HDRKQFPFAT MLSIAANTLN INVGRQIHTQ 540 AIVATADSES QVGNSLVDMY AKCGRFNEAK RIFASLADRS TVPWTALISA YVQKGLHEEG 600 LELYNEMLRG NVSPDQATFA SILSACANLA SLSLGKQLHS SVIRLGFICN VFPASALLDM 660 YAKCGSMKDA LQTFQEMPKR NFVCWNALIS AYAQNGDGEG TLRSFEWMVQ SGFAPDSVSF 720 LSVLTACSHC GLVEEGLHYF NSLIHNSKII PKREHYASMV DVLCRSGKFD EAEKLMARMP 780 FEPDEIMWSS VLNSCRIHKN QELAERAANR LFNMAELRDA AAYVNMSNIY AETGQWESLR 840 KVKKAMRERG MRKVTAHSWV EIKHKIHVFT ANDNSHPDSE NIMSKIDELA KDMEKEGYKA 900 DTSCALHNED DEIKVESLKY HSERLAIAFA LISTPEGTPI VVMKNLRACT DCHAAIKVIT 960 KIVGREITVR DSSSIPTPCA KLHSQFSLNC SSSAAHQSFG VVFSRNGLEA NTIPHKSNFD 1020 TTFNNCARQI LQQIKTHTWV SKDFFSSTVN GNSQVVFCWL FSHREVGIPE FLNGIGNGVE 1080 AHVAKLESEI GDFQKLLVTC TLRPKKLGIP VKQEADLEIH PKVWAGTLEV LSLANQILVS 1140 IELAIWTMVM TIKTPSKGRQ KIAIAKIPKR SNLQVTFSKH CSGLFTKASE LCTLCGVEIV 1200 IIVFSPANKP FSFGHPSVET LVDCFLTPSP SSFPSSTQHA HYCREVSVEH ELNMQLTQTQ 1260 GQLEAEKQQG EALDKLSRGS ERSSQCWWEN PIEELGLDEL QILQAAMEEL KKNMTEQMST 1320 SLEQFRCLEE GAEEFFRKPV KIVRCHMVKG TSMEDEADVK GRGSPEKTRT KYNGFDVVS

Sequence ? help Back to Top

Protein Sequence Length: 1379 aa Download sequence

MGVGAEEAQF HVLAVDDSII DRKLIERLLK TSSYQVTAVD SGSKALEFLG LNDQDDQSTI  60
AEAPSVSPNN QHQDVDVNLI ITDYCMPGMT GYDLLKKIKE SKSLKDIPVV IMSSENEPSR  120
INRCLEEGAE EFFLKPVKLS DVHKLRPHMI KGTSMEDEAD IKGGEEIQSP EKTRTQYNGF  180
DVPMTAFRSK RLVNFHLNPP SFIDARIIKT GFDPNTFRSN FQLNNLLKRG EVSNARQVFE  240
KMPQRNTFSI NMMISSYVNC GCLSKARELL DCMVDRTAVT WTILIGGYSQ ASQYREAFKL  300
YAQMHRWGTK PDYVTFATLL SGCSNMDATK ELVQVHSHIL KLGYHSTLKV SNSLVDSYCK  360
SHRLDFAFRL FKEMPERDAV TFNALITGYS KDGLNEDAIN LFAEMRNLGY KPSEFTFAAL  420
LCAGIGLDDI VFGQQVHGLV VKTNFVWNVF VGNALLDFYS KHDYAVKARK LFDEMPQLDC  480
ISYNVIISCY VWDGQFKEAL DLFHELQFTK HDRKQFPFAT MLSIAANTLN INVGRQIHTQ  540
AIVATADSES QVGNSLVDMY AKCGRFNEAK RIFASLADRS TVPWTALISA YVQKGLHEEG  600
LELYNEMLRG NVSPDQATFA SILSACANLA SLSLGKQLHS SVIRLGFICN VFPASALLDM  660
YAKCGSMKDA LQTFQEMPKR NFVCWNALIS AYAQNGDGEG TLRSFEWMVQ SGFAPDSVSF  720
LSVLTACSHC GLVEEGLHYF NSLIHNSKII PKREHYASMV DVLCRSGKFD EAEKLMARMP  780
FEPDEIMWSS VLNSCRIHKN QELAERAANR LFNMAELRDA AAYVNMSNIY AETGQWESLR  840
KVKKAMRERG MRKVTAHSWV EIKHKIHVFT ANDNSHPDSE NIMSKIDELA KDMEKEGYKA  900
DTSCALHNED DEIKVESLKY HSERLAIAFA LISTPEGTPI VVMKNLRACT DCHAAIKVIT  960
KIVGREITVR DSSSIPTPCA KLHSQFSLNC SSSAAHQSFG VVFSRNGLEA NTIPHKSNFD  1020
TTFNNCARQI LQQIKTHTWV SKDFFSSTVN GNSQVVFCWL FSHREVGIPE FLNGIGNGVE  1080
AHVAKLESEI GDFQKLLVTC TLRPKKLGIP VKQEADLEIH PKVWAGTLEV LSLANQILVS  1140
IELAIWTMVM TIKTPSKGRQ KIAIAKIPKR SNLQVTFSKH CSGLFTKASE LCTLCGVEIV  1200
IIVFSPANKP FSFGHPSVET LVDCFLTPSP SSFPSSTQHA HYCREVSVEH ELNMQLTQTQ  1260
GQLEAEKQQG EALDKLSRGS ERSSQCWWEN PIEELGLDEL QILQAAMEEL KKNMTEQMST  1320
SLEQFRCLEE GAEEFFRKPV KIVRCHMVKG TSMEDEADVK GRGSPEKTRT KYNGFDVVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	3e-43	M-type_MADS family protein