PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro07_G07786

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 617aa MW: 67300.1 Da PI: 7.6252

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro07_G07786	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.5	1.2e-38	70	152	2	83
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ +a+ s+s+++ Ro07_G07786 70 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALaSAGGSVSQQG 152 789******************************************************************88854444444444 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MDSKGSKQQQ PQEIPSFLSH PQPQQQPQQQ QHHQQPNNNN MSENNNNKPA ESKDFQIVVA 60 DKEETKKQLA PKRSSNKDRH TKVEGRGRRI RMPALCAARI FQLTRELGHK SDGETIQWLL 120 QQAEPSIIAA TGTGTIPASA LASAGGSVSQ QGISLPAGLH QKIDALGPSN VESSASRTSW 180 GMVGGDLGRP LQTGLWPPTG FGFSQSSGPS TTTNLGSSNY LQKISFPGFD LPVTNMSFTS 240 ILGGGGGTTT QQLPGLELGL SQDGPIGVLS SQALSHIYQQ MGHARVHHQH QQHHQEAPSS 300 KDDSQGSGGQ YQQNPVVESH QGSPGLLLRQ VLDRLLVQIR PFTRQENTVI QPHLWRFYFI 360 FSPTYVGCGF ICPHIVNFSV LLGAIISWGF LWPLIPQYAG HWYPADLGTI FLIVIEIWLK 420 ADLTLSIMFV FITIALILGD GLYSWIKFIS IMLNAICSES SKQNNLPLVK ENLVTMPIIF 480 LPLKWYLVLC SYILVPSLAF CDSYGTDLTD WSLASTYGKI GLFIIASLVG SDGGVRAGLA 540 ARGLVGTAMG CVMALTFWLF WTAFDIGSPD GPYKAPYAVI FREMATLGIE GFSELPKHCL 600 AMCCGFFVAA LVINHLS

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MDSKGSKQQQ PQEIPSFLSH PQPQQQPQQQ QHHQQPNNNN MSENNNNKPA ESKDFQIVVA  60
DKEETKKQLA PKRSSNKDRH TKVEGRGRRI RMPALCAARI FQLTRELGHK SDGETIQWLL  120
QQAEPSIIAA TGTGTIPASA LASAGGSVSQ QGISLPAGLH QKIDALGPSN VESSASRTSW  180
GMVGGDLGRP LQTGLWPPTG FGFSQSSGPS TTTNLGSSNY LQKISFPGFD LPVTNMSFTS  240
ILGGGGGTTT QQLPGLELGL SQDGPIGVLS SQALSHIYQQ MGHARVHHQH QQHHQEAPSS  300
KDDSQGSGGQ YQQNPVVESH QGSPGLLLRQ VLDRLLVQIR PFTRQENTVI QPHLWRFYFI  360
FSPTYVGCGF ICPHIVNFSV LLGAIISWGF LWPLIPQYAG HWYPADLGTI FLIVIEIWLK  420
ADLTLSIMFV FITIALILGD GLYSWIKFIS IMLNAICSES SKQNNLPLVK ENLVTMPIIF  480
LPLKWYLVLC SYILVPSLAF CDSYGTDLTD WSLASTYGKI GLFIIASLVG SDGGVRAGLA  540
ARGLVGTAMG CVMALTFWLF WTAFDIGSPD GPYKAPYAVI FREMATLGIE GFSELPKHCL  600
AMCCGFFVAA LVINHLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	4e-57	TCP family protein