PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G31622 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 63aa MW: 6765.85 Da PI: 10.7659 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.8 | 4.5e-21 | 14 | 52 | 9 | 47 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 qvtfs+Rr g++KKA ELSv Cdaevav++fs tgkl Ro05_G31622 14 SQVTFSRRRRGLFKKAGELSVHCDAEVAVVVFSATGKLS 52 69***********************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence |
MTTAIKIENL PVASQVTFSR RRRGLFKKAG ELSVHCDAEV AVVVFSATGK LSVSSSSSRL 60 IDL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 1e-17 | MIKC_MADS family protein |