PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G22140

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 710aa MW: 79134.6 Da PI: 5.1264

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G22140	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	39.4	1e-12	43	122	13	99
TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 s+ + lp k a + ++++ led+ g +Wev++ + g+ +++GW+ F+ +++L++g f+vF ++ s f +vk++++ Ro05_G22140 43 SNFMELPPKVA-HVvL-L--SDQKTFLEDSLGLRWEVEI--SSVNGSLSFQQGWNAFALDHDLQVGNFLVFNYIPGSHF--TVKIYDN 122 35578888887.3322.2..345799***********..66667788**********************976888..9999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence
MGHEFKAGAE FTHQKCLLVH GNIISGSHVD TSFFKVMFGK QFSNFMELPP KVAHVVLLSD 60 QKTFLEDSLG LRWEVEISSV NGSLSFQQGW NAFALDHDLQ VGNFLVFNYI PGSHFTVKIY 120 DNSGCELKFF ETLHPNKRKR DHTDGRCHAI VKSSMSKSGS DTCAGSDAEI SKHLNEVNGM 180 KKPLIITENA SNHDDNNERS KRMCKTEFSE EMSYMMNREY GDKQGGNRAP ILDLFSEEMF 240 KKAPPSDKDL STNVTSGNPF PTVPENPEQN EESFSGISNR ATKNCQTADA SGKTRLSNDQ 300 VAVSGKKHDL IDDRCQSANK KFTVISKSYD KAMKIESVDL TSDPCSQEVI PERNDKVRTI 360 IEKESLELTS DPCSQEVIPE RKDEVKMIVE NVIVDLTSDP CSQVVIEKVQ LIAEESLDLS 420 TKVDNQSSTS NTRAIPSDAA EFERTEEINK TEAKVRKMPS EDSCIETSGH PFPTHSENPE 480 ENVETVSDTS KTTSDVSNKN ARLLKDQARH KLLSGNDQVA ISQNEPDFID ANKKLTGISE 540 SMHIPITSGC QNDSGESLKI SYKLQNLSNF ARENDGALPV VKPEPVDPDE VATCTSFMIS 600 CLVATGRQSF LELPKSLPVS LNTTRARPKL DRRIVFLQGP DERLWPVLYI QKYYFRTLAN 660 GWEAFSMANN IEQGDQCTFE VKSQTEAICS VQVIKSRAGG MEIFGDLHNL

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence

MGHEFKAGAE FTHQKCLLVH GNIISGSHVD TSFFKVMFGK QFSNFMELPP KVAHVVLLSD  60
QKTFLEDSLG LRWEVEISSV NGSLSFQQGW NAFALDHDLQ VGNFLVFNYI PGSHFTVKIY  120
DNSGCELKFF ETLHPNKRKR DHTDGRCHAI VKSSMSKSGS DTCAGSDAEI SKHLNEVNGM  180
KKPLIITENA SNHDDNNERS KRMCKTEFSE EMSYMMNREY GDKQGGNRAP ILDLFSEEMF  240
KKAPPSDKDL STNVTSGNPF PTVPENPEQN EESFSGISNR ATKNCQTADA SGKTRLSNDQ  300
VAVSGKKHDL IDDRCQSANK KFTVISKSYD KAMKIESVDL TSDPCSQEVI PERNDKVRTI  360
IEKESLELTS DPCSQEVIPE RKDEVKMIVE NVIVDLTSDP CSQVVIEKVQ LIAEESLDLS  420
TKVDNQSSTS NTRAIPSDAA EFERTEEINK TEAKVRKMPS EDSCIETSGH PFPTHSENPE  480
ENVETVSDTS KTTSDVSNKN ARLLKDQARH KLLSGNDQVA ISQNEPDFID ANKKLTGISE  540
SMHIPITSGC QNDSGESLKI SYKLQNLSNF ARENDGALPV VKPEPVDPDE VATCTSFMIS  600
CLVATGRQSF LELPKSLPVS LNTTRARPKL DRRIVFLQGP DERLWPVLYI QKYYFRTLAN  660
GWEAFSMANN IEQGDQCTFE VKSQTEAICS VQVIKSRAGG MEIFGDLHNL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	1e-11	B3 family protein