PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G01825
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family LFY
Protein Properties Length: 404aa    MW: 45106.6 Da    PI: 6.9482
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G01825genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY603.34.9e-18413861385
      FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap.leaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseif 97 
                  mdp+afsaslfkwd r +a+ pp+r++ ea +++ + ++  ++ + r+l +le++f+ayGvry+t+akiaelGftv+tL+dmkd+eldd+m+sls+ f
  Ro05_G01825   1 MDPDAFSASLFKWDIRGMAV-PPNRVQFEAPQQAVAaAAGYSVRTPRELVGLEDMFRAYGVRYFTAAKIAELGFTVNTLLDMKDDELDDMMNSLSQYF 97 
                  9**************98775.56777666654444412333444445577************************************************ PP

      FLO_LFY  98 rldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkr 195
                  r+dllvGeryGikaavraerrrl ee+  ++rr+ ls d+ +a+dalsqeglseepvq+eke++gsgg+   ++e+vaa+ek+++ ++ k+     +r
  Ro05_G01825  98 RWDLLVGERYGIKAAVRAERRRLVEED--SRRRHALSGDT-NAVDALSQEGLSEEPVQQEKEMVGSGGGA--AWEVVAAAEKRKKLRRVKRGG--GHR 188
                  *************************88..88899999996.68***********************9998..999999985433222222211..111 PP

      FLO_LFY 196 kkkkelkseededeeeeededeeg............sgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkv 281
                   +++   +  de+eeee+++  +g            ++ +g+erqrehPfivte+gevargkknGLDYLf+LyeqC++fL+qvq+iakerGekcPtkv
  Ro05_G01825 189 -SSN---EGVDEEEEEENEDGINGggggehpsraliMRGGGRERQREHPFIVTEAGEVARGKKNGLDYLFHLYEQCHDFLTQVQNIAKERGEKCPTKV 282
                  .111...22222222222222222345677888888777899******************************************************** PP

      FLO_LFY 282 tnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLCh 379
                  tnqvfr+akkaga+yinkPkmrhYvhCYalhcLdeeasnalrr+ k rgen+Gawrqacy+p+v+iaa qgwdida+f+ah +Ls+WYvPtkLrqLCh
  Ro05_G01825 283 TNQVFRFAKKAGANYINKPKMRHYVHCYALHCLDEEASNALRRECKLRGENIGAWRQACYRPVVEIAAGQGWDIDAIFSAHAQLSVWYVPTKLRQLCH 380
                  ************************************************************************************************** PP

      FLO_LFY 380 lerska 385
                  +er++a
  Ro05_G01825 381 TERNNA 386
                  ***997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    
MDPDAFSASL FKWDIRGMAV PPNRVQFEAP QQAVAAAAGY SVRTPRELVG LEDMFRAYGV  60
RYFTAAKIAE LGFTVNTLLD MKDDELDDMM NSLSQYFRWD LLVGERYGIK AAVRAERRRL  120
VEEDSRRRHA LSGDTNAVDA LSQEGLSEEP VQQEKEMVGS GGGAAWEVVA AAEKRKKLRR  180
VKRGGGHRSS NEGVDEEEEE ENEDGINGGG GGEHPSRALI MRGGGRERQR EHPFIVTEAG  240
EVARGKKNGL DYLFHLYEQC HDFLTQVQNI AKERGEKCPT KVTNQVFRFA KKAGANYINK  300
PKMRHYVHCY ALHCLDEEAS NALRRECKLR GENIGAWRQA CYRPVVEIAA GQGWDIDAIF  360
SAHAQLSVWY VPTKLRQLCH TERNNATVSS SASGGSGTAD HLPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-98LFY family protein