PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G37215

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 382aa MW: 42858.9 Da PI: 6.3138

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G37215	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.4e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++++G+g +W + ++++g++R++k+c++rw++yl Ro04_G37215 14 KGPWSPEEDATLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	38.5	2.8e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ Ro04_G37215 69 GGFSEEEDNIICNLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDATLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC NLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR 120 RKQSGTNRGS QDLMKDASDD AHQALSSSAL ERLQLHMQLQ NLQNPFSFYN NPALWPKLHP 180 FQEKMIQTVQ SMNDQNSSNP LMMQQFALPS HDQTVQGHKV NDLLYEQTTG ASFAIEEQYA 240 KLCINPKMAE LENAFNGMSS SFISTSNPVD STIVAAKADG IEQQVNSSFQ AQLGGINKSV 300 DFTSQQEHDQ MAEFDCFQEM NVSKDNMMWW ANDFDTKSAS SNSWDSTSVL QSQGILTTVD 360 TRVGNQVVTG SESNVWRSVV ET

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDATLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC NLYISIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGR  120
RKQSGTNRGS QDLMKDASDD AHQALSSSAL ERLQLHMQLQ NLQNPFSFYN NPALWPKLHP  180
FQEKMIQTVQ SMNDQNSSNP LMMQQFALPS HDQTVQGHKV NDLLYEQTTG ASFAIEEQYA  240
KLCINPKMAE LENAFNGMSS SFISTSNPVD STIVAAKADG IEQQVNSSFQ AQLGGINKSV  300
DFTSQQEHDQ MAEFDCFQEM NVSKDNMMWW ANDFDTKSAS SNSWDSTSVL QSQGILTTVD  360
TRVGNQVVTG SESNVWRSVV ET

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-87	MYB family protein