PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G21029

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 340aa MW: 38474.7 Da PI: 6.9113

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G21029	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.8e-05	177	196	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Ro03_G21029 177 FSCPLCFKTFNRYNNMQMHM 196 89*****************9 PP
2	zf-C2H2	14.6	9.6e-05	261	283	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Ro03_G21029 261 FMCRKCGKAFAVRGDWRTHEKNC 283 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MTDPYPSNYF NGWFNLNFSP PTSSLPYSFH HHHARFSNYN MINSNNNSFF SIHHQSSSSI 60 SSSPPSPPLK EALPLLSLSP TRDHQDELAE DHDQHADIDD DDDDETVTVA LHLGLPNPGS 120 ATDLISRLSS SEISSADKED AVTTPNASST GYASNRLNKG QYWIPTPSQI LIGPTQFSCP 180 LCFKTFNRYN NMQMHMWGHG SQYRKGPESL RGTQPTAMLR LPCYCCAPGC RNNIDHPRSK 240 PLKDFRTLQT HYKRKHGIKP FMCRKCGKAF AVRGDWRTHE KNCGKLWYCT CGSDFKHKRS 300 LKDHIKAFGQ GHAAYGIDCF EEEEDDDAVS EIEENDSCRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-127	C2H2 family protein