PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G08155

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB_related

Protein Properties

Length: 760aa MW: 84581.5 Da PI: 10.4534

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G08155	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.8	1.4e-09	10	57	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrw 44 ++W t E++llv av+++G+++W+++a +++ +t+ +c++++ Ro03_G08155 10 QPWGTLEELLLVSAVNRHGTKSWDSVAMEVQsrsssAVLTAQNCRDKF 57 79*****************************88888667888888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence
MAREHETSAQ PWGTLEELLL VSAVNRHGTK SWDSVAMEVQ SRSSSAVLTA QNCRDKFDDL 60 KRRFVSQNDT KSHGLAPMVD ELRRLRVEEL RSEVRRRDVS IVSLELKVKR LEEDRDRSLK 120 EEAEAGPTKD LQRGGGEQSV LPEKLAGKSN SGEDFVSDSS ERENRSFNES NSTSQRSEVK 180 ANGVEEKKAF EEEEPDPERN ESDPVRTEIR SEPERDCSAN GKVIDDNKED NENNNKKKAG 240 VEEAGRPGEW NELSGSLFES KRVVVKEGGV PSKQNSDVQS SASLSKKRKR RRKGGDSSSG 300 EEPEGEENSP ATTKRVKLVK LEPLVKVLTI IRSHRLGSVF ERRLRSQVVV GPVRSPKMGS 360 KCVQNSSLSF VVFYLISLAW LAIHRTTGLG VASKPDPESQ RYKNLIRQHV DLHVVQSRLN 420 KGVYKDCTHN FFRDLLLVFI NAVVFFRKTT PEHVAALELR SLVLKEMNEQ LPKSQPVVST 480 VKPKPNKESD ITTTTTTTTT STSVRPSKSS SIVVCGKRGS INALSEGGNN NKKGGVRKER 540 VEVEEKEAKV KVNEKKVDDI PLVKTEDKGV RKRRTQERRG GRRSGTTTSN SKNVESKTKL 600 EHGGNDPSSH DGLEVVRTEK KEEVKKRQGA ASFLRRMKQN GRGGVGRANN SSDVSEDESK 660 DSMVEEEDEE EEEVDDMKKK KAGRKKAEVE RKVRVTRSSS GNRGRRGGRG QESGGRAKRG 720 VGRPPKRPET AAAGSGKRGK DNGEADQVGS AGRPRKRTRR

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence

MAREHETSAQ PWGTLEELLL VSAVNRHGTK SWDSVAMEVQ SRSSSAVLTA QNCRDKFDDL  60
KRRFVSQNDT KSHGLAPMVD ELRRLRVEEL RSEVRRRDVS IVSLELKVKR LEEDRDRSLK  120
EEAEAGPTKD LQRGGGEQSV LPEKLAGKSN SGEDFVSDSS ERENRSFNES NSTSQRSEVK  180
ANGVEEKKAF EEEEPDPERN ESDPVRTEIR SEPERDCSAN GKVIDDNKED NENNNKKKAG  240
VEEAGRPGEW NELSGSLFES KRVVVKEGGV PSKQNSDVQS SASLSKKRKR RRKGGDSSSG  300
EEPEGEENSP ATTKRVKLVK LEPLVKVLTI IRSHRLGSVF ERRLRSQVVV GPVRSPKMGS  360
KCVQNSSLSF VVFYLISLAW LAIHRTTGLG VASKPDPESQ RYKNLIRQHV DLHVVQSRLN  420
KGVYKDCTHN FFRDLLLVFI NAVVFFRKTT PEHVAALELR SLVLKEMNEQ LPKSQPVVST  480
VKPKPNKESD ITTTTTTTTT STSVRPSKSS SIVVCGKRGS INALSEGGNN NKKGGVRKER  540
VEVEEKEAKV KVNEKKVDDI PLVKTEDKGV RKRRTQERRG GRRSGTTTSN SKNVESKTKL  600
EHGGNDPSSH DGLEVVRTEK KEEVKKRQGA ASFLRRMKQN GRGGVGRANN SSDVSEDESK  660
DSMVEEEDEE EEEVDDMKKK KAGRKKAEVE RKVRVTRSSS GNRGRRGGRG QESGGRAKRG  720
VGRPPKRPET AAAGSGKRGK DNGEADQVGS AGRPRKRTRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	286	291	KKRKRR
2	286	292	KKRKRRR
3	287	293	KKRKRRR
4	287	292	KRKRRR
5	288	292	RKRRR
6	571	599	RKRRTQERRGGRRSGTTTSNSKNVESKTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	9e-18	MYB_related family protein