PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro03_G07486 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | NF-YC | ||||||||
Protein Properties | Length: 185aa MW: 20977.9 Da PI: 10.6031 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45.6 | 1.6e-14 | 75 | 167 | 7 | 99 |
NF-YC 7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e+++e+++d+k ++P+ rik+i++a++ +is++a l+ ka e f+ +++ + + + +++++ ++++v + + +dfl d vp+ Ro03_G07486 75 EEEVEEKEDVKSYTFPMERIKRIIRAEDSDLRISSDAIFLVNKATEKFLEKFSEDAHKCCVKDRKKAIAYKHLSSVVCKQKRYDFLSDFVPER 167 5789**********************999999**********************************************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence |
MATPKKAIPP KKTKETKKPS SKKKDNNNNN KKTSNGSVAA VRSPSAKSQK NREQNGDKST 60 KTPTPKSNKG KRVREEEVEE KEDVKSYTFP MERIKRIIRA EDSDLRISSD AIFLVNKATE 120 KFLEKFSEDA HKCCVKDRKK AIAYKHLSSV VCKQKRYDFL SDFVPERVKA EDALAKRKQS 180 EAGTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 9e-34 | NF-YC family protein |