PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G04492
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HSF
Protein Properties Length: 391aa    MW: 43721.9 Da    PI: 4.4435
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G04492genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind971.9e-30391512102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT............XTTSEEEEESXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks............kekiweFkhksF 86 
                   Fl+k++e++ed++++ ++sws+  nsfvv+d+++f++ +Lp+yFkhsnf+SF+RQLn+Y+ +  +   +++              +++ weF+++ F
   Ro02_G04492  39 FLTKTFEMVEDPSTDAIVSWSRARNSFVVWDSHQFSSILLPRYFKHSNFSSFIRQLNTYNSTWFSVGIAQKIIvtefhtqgfkkvDPDRWEFANEGF 135
                   9***********************************************************777776665533366677776654449********** PP

                   XXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  87 kkgkkellekikrkks 102
                     g+++ll++i+r+++
   Ro02_G04492 136 LGGQRHLLKTIRRRRH 151
                   *************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    
MEGVAVKVEA IAACSVGSSS SSLSPRPIEG LHDVGPPPFL TKTFEMVEDP STDAIVSWSR  60
ARNSFVVWDS HQFSSILLPR YFKHSNFSSF IRQLNTYNST WFSVGIAQKI IVTEFHTQGF  120
KKVDPDRWEF ANEGFLGGQR HLLKTIRRRR HVSQSMQQEG GGGGCVELGQ FGLETELERL  180
KRDRNVLMSE IVRLKQQQQN SRELVIAIED RLQTTERRQQ QMMNFLAKAL KNPCFIQNFA  240
QKSELAGVEI GRKRRLAASP SVENLQEVPT TCVLDDSASQ DQGELVTMES DFESLLSAAA  300
VDNESSSDIN YSNLTSIPTS SGGNLGTVNE TIWEELWSEE LIEGNPEEEV VVGNESEIDV  360
EVEDLVADPS EWGEDLQDLV DQMGFLIKSK P
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-107HSF family protein