PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro02_G02266
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ARF
Protein Properties Length: 920aa    MW: 100952 Da    PI: 5.0789
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro02_G02266genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.43.1e-24152253199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F   ++++ +
  Ro02_G02266 152 FCKILTASDTSTHGGFSVPRRAAEKLfppldftMQPP-T-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQ 245
                  99*********************999*****954444.4.48************************************************..457777 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+v+r+
  Ro02_G02266 246 LLVGVRRA 253
                  8*****97 PP
2Auxin_resp116.62.1e-38278361183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+++YnPra++seFv++++k++kal+ +++svGmRf m+fete+s +rr++Gt+vg+sd+dp+rWp+SkWr+L+
  Ro02_G02266 278 AAHAAANRSPFTIFYNPRACPSEFVIPLAKFQKALYgTQLSVGMRFGMMFETEESGKRRYMGTIVGISDFDPLRWPGSKWRNLQ 361
                  79**********************************9*********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    
MGSVLEEKMR IGGGLLSGSG AAPSSILEEM KLLKELQDHS GSRKAINSEL WHACAGPLVC  60
LPQVGSLAYY FPQGHSEQVA VSTKRMATSQ IPNYPNLPSQ LLCQVQNVTL HADKETDEIF  120
TQMCLKPVNS EKDVFPVPDF GLKPSKHPSE FFCKILTASD TSTHGGFSVP RRAAEKLFPP  180
LDFTMQPPTQ ELVVRDLHDN TWTFRHIYRG QPKRHLLTTG WSLFVGSKRL RAGDSVLFIR  240
DEKSQLLVGV RRANRQQTTL PSSVLSADSM HIGVLAAAAH AAANRSPFTI FYNPRACPSE  300
FVIPLAKFQK ALYGTQLSVG MRFGMMFETE ESGKRRYMGT IVGISDFDPL RWPGSKWRNL  360
QVEWDEPGCC DKQNRVSSWE VETPESLFIF PSLTSSLKRP LHSGFLGAET EWANMIKRPF  420
IRVPEIGNMN SLPYPISNLY SEQLVNMLLK PQLGGHAGTL SALQQESAAS GDPVEDMKTM  480
QAKINQKNLV FSSEVMSLQS PNPSQLNSTA KCGSQIPVGN NTDKSKLEPD LSTDQVSQLS  540
STGQGNEDKL AAGIASSPYN HAFVNQNQGS GQLQTSPRPM QQPLESILYH SQQQTDIPQS  600
DFNSTNGSLP SLDNDDCMFY QPFAGILRSP GPLSAFGSQD SPSVITEANN FSLTSMGQEM  660
WDNSLSNYRL LLQVDQVTSS HQDPCTLNCV PNSSSLRDLS DESNNQSGIY GCPTGVSNVV  720
DPSVSSTIMD EFCALKNADF QNHSECLVGN LSSSQDLQSQ ITSASLGDSQ AFSRQELHDN  780
SGGTSSSNVD LDENSLLQNS SWHQVVPPVR TYTKVQKAGS VGRSIDVTSY TNYEELCCAI  840
ECMFGLEGLL NDPRGSGWKL VYVDYENDVL LVGDDPWEEF VGCVRCIRIL SPTEVQQMSE  900
EGMKLLNSAA AMQGMNTTVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein