PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G23890
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Dof
Protein Properties Length: 241aa    MW: 24897.7 Da    PI: 8.4049
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G23890genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.31.6e-382585262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 ++++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s
  Ro01_G23890 25 EQEHLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRS 85
                 57889****************************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MPSDSGDPNN RRPTKAQSLG APPPEQEHLP CPRCESTNTK FCYYNNYNFS QPRHFCKSCR  60
RYWTHGGTLR DIPVGGGSRK NAKRSRTSST GSMVSSTSDQ PLPATPVFVP VSATQGGGGS  120
VQFGGCGGLK ANVSNGCGGG SFTSLLNTQP GFLALGGFGL GLATGFEEMG FGFGRAVWPF  180
PGVGSDGGAL IGANGVAHGM MNAWQFENGE TGGLVNVGGG GDFCSWPELA ISTPGNGLKL  240
H
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.11e-51Dof family protein