PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G02920

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HSF

Protein Properties

Length: 546aa MW: 61344.5 Da PI: 5.4419

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G02920	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.9	1.1e-35	139	230	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d e++ ++swse +sf+v+d++ef+k++LpkyFkhsnf+SF+RQLn+YgFkkv+ ++ weF+++ F++gkk+ll++ik Ro01_G02920 139 FLNKTFQMVDDTETDPVVSWSEARQSFIVWDSHEFSKTLLPKYFKHSNFSSFIRQLNTYGFKKVDPDR---------WEFANEGFQRGKKHLLKSIK 226 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+++ Ro01_G02920 227 RRSR 230 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MVVPDGGFGG SCSPFSSTTQ FSKPKNTSEE AVEESKVVTS KGGNFDGSSS SSSSSSSSTA 60 SPKLTEEVEK PNETLELAKR EVVQIKEESI EFVVDDFDCR DCFNCGGSGN NTNGSHSTSS 120 SVVLPKPMEC LLETGPPPFL NKTFQMVDDT ETDPVVSWSE ARQSFIVWDS HEFSKTLLPK 180 YFKHSNFSSF IRQLNTYGFK KVDPDRWEFA NEGFQRGKKH LLKSIKRRSR YNKQPQGSIV 240 SADSTGKAGL EAQLETLKKD QDVLKVEILN LRQQHKYSQH QLTAVEQRIR SSESKQQRML 300 FFLTKATRNP NFVQHIMQKR MLKRELDGGD LGKRRRLLSA QGFEDFGECG NQVHVPEAVV 360 PPQQETTLSA SMVDKSLSSV QNQKPRADMH SVYHDVSEEL LEGNSVFDDE FAVNDPYFYQ 420 ELEDLITEPQ EFEDLIVKPR DWSGYVSNCL VEQAVSLGLT STDVEDEEDD IPERSDSCLS 480 SSKALLGTSW ISKYLFLFVS RTSAVSSPVY VICDISSQSM ILFSTSEQRG KKRFRISTVH 540 INKQKT

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MVVPDGGFGG SCSPFSSTTQ FSKPKNTSEE AVEESKVVTS KGGNFDGSSS SSSSSSSSTA  60
SPKLTEEVEK PNETLELAKR EVVQIKEESI EFVVDDFDCR DCFNCGGSGN NTNGSHSTSS  120
SVVLPKPMEC LLETGPPPFL NKTFQMVDDT ETDPVVSWSE ARQSFIVWDS HEFSKTLLPK  180
YFKHSNFSSF IRQLNTYGFK KVDPDRWEFA NEGFQRGKKH LLKSIKRRSR YNKQPQGSIV  240
SADSTGKAGL EAQLETLKKD QDVLKVEILN LRQQHKYSQH QLTAVEQRIR SSESKQQRML  300
FFLTKATRNP NFVQHIMQKR MLKRELDGGD LGKRRRLLSA QGFEDFGECG NQVHVPEAVV  360
PPQQETTLSA SMVDKSLSSV QNQKPRADMH SVYHDVSEEL LEGNSVFDDE FAVNDPYFYQ  420
ELEDLITEPQ EFEDLIVKPR DWSGYVSNCL VEQAVSLGLT STDVEDEEDD IPERSDSCLS  480
SSKALLGTSW ISKYLFLFVS RTSAVSSPVY VICDISSQSM ILFSTSEQRG KKRFRISTVH  540
INKQKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	228	LKSIKRR
2	333	337	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-86	HSF family protein