PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro01_G01295 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | WOX | ||||||||
Protein Properties | Length: 384aa MW: 44214.3 Da PI: 8.6776 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.2 | 1.1e-21 | 177 | 237 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+lF + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Ro01_G01295 177 RQRWTPTPVQLQILEQLFDQgNGTPSKQKIKEITSELgqhgQISETNVYNWFQNRRARSKR 237 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 100.5 | 1.3e-32 | 176 | 239 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+l+++G tP+k++i++it+eL ++G+i+++NV++WFQNr+aR+++kq Ro01_G01295 176 ARQRWTPTPVQLQILEQLFDQGNGTPSKQKIKEITSELGQHGQISETNVYNWFQNRRARSKRKQ 239 789***********************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence |
MTPSCYRLKD LIQQKKNGRW GILTPTKFQF LFMSISLWSI YISLPLFVSF FTFWLSLSLK 60 SLLSLIFSLW KHRDSKRKKE RVFVRTMMEW DKPQQQQKEQ EIDGNGNGNG GVMFVKVMTD 120 EQLETLRKQI AVYATICEQL VEMHKNLTAQ QDLAGVRMGN LYCDPLMTSV GHKITARQRW 180 TPTPVQLQIL EQLFDQGNGT PSKQKIKEIT SELGQHGQIS ETNVYNWFQN RRARSKRKQQ 240 NATSNNAESE VETEVDSPKD KKKGLQDQLL HSQQNSSAQR AEDLCFQNPE MSSDLHFLDP 300 QAIKEDKMFA SSSDLRPSRS LSHMSFYDEV LSSSRGNELM TGKMEVGGSY NLFQQAEDYS 360 IHAMPNLSRV MVPSEFKLEK CGDH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 81 | KHRDSKRKKER |
2 | 231 | 239 | RRARSKRKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 7e-89 | WOX family protein |