PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro01_G00993

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bZIP

Protein Properties

Length: 346aa MW: 36168.7 Da PI: 6.5192

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro01_G00993	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	73.6	2.7e-23	254	316	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL++ v+ L++eN+ Lk+el++l++e++kl se+ Ro01_G00993 254 ERELKRQKRKQSNRESARRSRLRKQAECEELQKSVQGLTNENHGLKDELQRLSQECEKLASEN 316 89**********************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence
MGTGEEGTPS KPSKQASTAQ EIPTQPSYPD WSSSMQAYYG AGAAPPPFFA STVASPTPHP 60 YMWGAQHPMM PPYGTPVPYP AMYPPGGVYA HPGMVTTSAA VPPTNPELEG KGTDGKERAS 120 AKKPKGTAGN TGLVSGKGGE SGKATSGSGN DGASQSAESG SEGSSDGSEE NGNHQEYGAN 180 KKGSFDKMLA EGANAQNNTA LVPGKPVVSM PATSLNMGMD LWNASPAGAG TAKMRGNQSG 240 APSAVGGDHW IQDERELKRQ KRKQSNRESA RRSRLRKQAE CEELQKSVQG LTNENHGLKD 300 ELQRLSQECE KLASENTSIK EELTRLCGPD LVASIEHQSH GGEGNS

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence

MGTGEEGTPS KPSKQASTAQ EIPTQPSYPD WSSSMQAYYG AGAAPPPFFA STVASPTPHP  60
YMWGAQHPMM PPYGTPVPYP AMYPPGGVYA HPGMVTTSAA VPPTNPELEG KGTDGKERAS  120
AKKPKGTAGN TGLVSGKGGE SGKATSGSGN DGASQSAESG SEGSSDGSEE NGNHQEYGAN  180
KKGSFDKMLA EGANAQNNTA LVPGKPVVSM PATSLNMGMD LWNASPAGAG TAKMRGNQSG  240
APSAVGGDHW IQDERELKRQ KRKQSNRESA RRSRLRKQAE CEELQKSVQG LTNENHGLKD  300
ELQRLSQECE KLASENTSIK EELTRLCGPD LVASIEHQSH GGEGNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	277	RRSRLRK
2	271	278	RRSRLRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	4e-94	bZIP family protein