PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro01_G00849
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 266aa    MW: 29649 Da    PI: 7.5217
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro01_G00849genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+++ +++G+  +W + + + g++R++k+c++rw++yl
      Ro01_G00849 14 RGPWSPEEDTTLKNYLHKHGTTgNWIALPTKAGLNRCGKSCRLRWLNYL 62
                     89*******************9*************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MGRAPCCDKS KVKRGPWSPE EDTTLKNYLH KHGTTGNWIA LPTKAGLNRC GKSCRLRWLN  60
YLKPDIKRGS FTEGEDNVIS TLYCSIGTSQ LPGRTDNDVK NYWNTKLKKK LLAAGKYYHV  120
ATRNTSDLNT AQLSASVPPK MENPDHVPET SSSCFGGTLP HLPYVSSGQS FDQLKQDFEP  180
CNHQFSHSKP MEVSDFGTSE RNNSLSQEVS SLPNSSSFAQ LDQYHCSLWS GYDAGININY  240
SEFLMGFGFE THTPPGDHFL LDGFGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-55MYB family protein