PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_ssc0000192.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 203aa    MW: 23662.1 Da    PI: 9.5026
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_ssc0000192.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.7e-27959151
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                krien+snrqvt+skR+ngi+KKA+E+ vLCda+v++ii++s+gk+ ey+s
  Rmu_ssc0000192.1_g000005.1  9 KRIENSSNRQVTYSKRKNGIIKKAKEITVLCDAKVSLIIIASSGKMVEYCS 59
                                79***********************************************96 PP
2K-box79.96.2e-2772169198
                       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                                 y+++sgk+l++ak+e+l++e++++kk ++ +q e+Rhl+Ged++sL++ +L+ Le+++e++l +iR++ ++++ +  e+ +  
  Rmu_ssc0000192.1_g000005.1  72 YHSQSGKRLWDAKHENLCNEVDRVKKDNDGMQIELRHLKGEDITSLNHVDLMALEEAIENGLASIRDRMSKYMDAVRENNRAL 154
                                 78999****************************************************************************** PP

                       K-box  84 ekelqeenkaLrkkl 98 
                                 e+e+++   +L+k++
  Rmu_ssc0000192.1_g000005.1 155 EDENKRLAYQLHKMM 169
                                 ***********9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MGRGKIEIKR IENSSNRQVT YSKRKNGIIK KAKEITVLCD AKVSLIIIAS SGKMVEYCSG  60
PQETRMKILD KYHSQSGKRL WDAKHENLCN EVDRVKKDND GMQIELRHLK GEDITSLNHV  120
DLMALEEAIE NGLASIRDRM SKYMDAVREN NRALEDENKR LAYQLHKMMK YEENLRDMNY  180
NNNNQIPFAL RVQPNQPNLH DRM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.17e-77MIKC_MADS family protein