PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_ssc0000097.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 894aa MW: 104716 Da PI: 8.5224

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_ssc0000097.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WTteE + ++++ +++G++ W ++a+ + +R+l+++ Rmu_ssc0000097.1_g000001.1 46 QWTTEELKHFYEGYRKYGKD-WMKVASVVR-HRSLENV 81 6***************99.*****.*9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 894 aa Download sequence
MAPVRKTKGV NKRFPYINKV ASNKFGDNAN KNKQKKRKLS DMLGPQWTTE ELKHFYEGYR 60 KYGKDWMKVA SVVRHRSLEN VEALYTMNRA YLSLPEGAAS VIGLTAMMCD YYSMLERSDS 120 EQNCIDNAGT PRKPQKLARG KLRNDASKGL EGHILDISQS RSIASDGCLS LLKNRRTDED 180 SSFDALLTLA DLSLRMPEAT AEMESSALVE EENFNIAKKS KLKGNPSVTM VEDTALKTSQ 240 LGKLKEGVQQ SDTGIQKRKQ KSPVKLQINE NEAQTEFPWS DNQMIEILKS SFNSRILRLW 300 IRRNKMARPK FKIISSSSKE FREDTQSQES LDEETPTSFQ KTLQHEMTKI KHRKKKQAED 360 TDDEETAEEE TEDEDEEETT SRYCVKKRSQ KRNTTDEEYD QKEKKKRKVQ LPKTKEQKAK 420 KHGRKKKEEK EETEKKEENI AKIDWRQQKC TLSAFWRLID AHKSRIPAAT WEILRHTVFW 480 GMIEPFLERK LTENQLHKHE ADLEIIMRYF DKKKNKFIFG EKEMEITVQD VKTLFDLPTE 540 GIYMELNKKL SKEERKESAI FDTNVKKDSV LKTEVEKKLV KELTKEKKEK DLKKQQDPKK 600 IASLIIMYLF AAFFFSRTAT NITWDLISVC EDVDNINKFN WSRMIIDFLL DGIQKYQKDK 660 PTTLSGCLLL IYYWFLEKTK IKNWIPGKET ETPRFVRWSI KEIFNLQEVY KNPGWPERLI 720 KDGPWLEKEW LEELEFEEKI EEQETPSFNN WVPQASRREE EEIIRLTGNM RVIIEELETV 780 LREEPTRENM EEKLKRLAEG NEQLSKQNKE MWTKLKIADE MIESMEKEKH DLLLETRANK 840 NQIAALYKLL AKAKHSGNAD DAGASQQKES QLQIVQISTE EEQVTGAEFE DNRA

Sequence ? help Back to Top

Protein Sequence Length: 894 aa Download sequence

MAPVRKTKGV NKRFPYINKV ASNKFGDNAN KNKQKKRKLS DMLGPQWTTE ELKHFYEGYR  60
KYGKDWMKVA SVVRHRSLEN VEALYTMNRA YLSLPEGAAS VIGLTAMMCD YYSMLERSDS  120
EQNCIDNAGT PRKPQKLARG KLRNDASKGL EGHILDISQS RSIASDGCLS LLKNRRTDED  180
SSFDALLTLA DLSLRMPEAT AEMESSALVE EENFNIAKKS KLKGNPSVTM VEDTALKTSQ  240
LGKLKEGVQQ SDTGIQKRKQ KSPVKLQINE NEAQTEFPWS DNQMIEILKS SFNSRILRLW  300
IRRNKMARPK FKIISSSSKE FREDTQSQES LDEETPTSFQ KTLQHEMTKI KHRKKKQAED  360
TDDEETAEEE TEDEDEEETT SRYCVKKRSQ KRNTTDEEYD QKEKKKRKVQ LPKTKEQKAK  420
KHGRKKKEEK EETEKKEENI AKIDWRQQKC TLSAFWRLID AHKSRIPAAT WEILRHTVFW  480
GMIEPFLERK LTENQLHKHE ADLEIIMRYF DKKKNKFIFG EKEMEITVQD VKTLFDLPTE  540
GIYMELNKKL SKEERKESAI FDTNVKKDSV LKTEVEKKLV KELTKEKKEK DLKKQQDPKK  600
IASLIIMYLF AAFFFSRTAT NITWDLISVC EDVDNINKFN WSRMIIDFLL DGIQKYQKDK  660
PTTLSGCLLL IYYWFLEKTK IKNWIPGKET ETPRFVRWSI KEIFNLQEVY KNPGWPERLI  720
KDGPWLEKEW LEELEFEEKI EEQETPSFNN WVPQASRREE EEIIRLTGNM RVIIEELETV  780
LREEPTRENM EEKLKRLAEG NEQLSKQNKE MWTKLKIADE MIESMEKEKH DLLLETRANK  840
NQIAALYKLL AKAKHSGNAD DAGASQQKES QLQIVQISTE EEQVTGAEFE DNRA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	386	408	KKRSQKRNTTDEEYDQKEKKKRK
2	404	409	KKKRKV
3	404	430	KKKRKVQLPKTKEQKAKKHGRKKKEEK
4	404	426	KKRSQKRNTTDEEYDQKEKKKRK
5	405	431	KKKRKVQLPKTKEQKAKKHGRKKKEEK
6	405	427	KKRSQKRNTTDEEYDQKEKKKRK
7	406	428	KKRSQKRNTTDEEYDQKEKKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-44	MYB_related family protein