PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0033761.1_g000002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NF-YC | ||||||||
Protein Properties | Length: 165aa MW: 18471.2 Da PI: 10.7066 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 29.5 | 1.6e-09 | 84 | 133 | 7 | 56 |
NF-YC 7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfil 56 e+++e+++d+k ++P+ r+k+i++a++ +is++a l+ ka e f+ Rmu_sc0033761.1_g000002.1 84 EEEVEEKEDVKSYTFPMERVKRIIRAEDSDLRISSDAVFLVNKATEKFLE 133 5789**********************999999**************9975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence |
MATPKKGTPP KKTKEAQKPS TKTSKNDGNK IKKKTSNGTA AAAAAVRSPS SKPQKSREQN 60 GGKSTKTPTP KSKKPQQNGK RVREEEVEEK EDVKSYTFPM ERVKRIIRAE DSDLRISSDA 120 VFLVNKATEK FLEKFSEDAH KCCVKDRKKA LAYKHLCKFC SQFPI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 7e-21 | NF-YC family protein |