PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0008851.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 410aa    MW: 44860.6 Da    PI: 4.2265
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0008851.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.81.1e-26855249
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               +ien   rqvtfskRr+g++KKA ELSvLCdaevavi+fsstgklye 
  Rmu_sc0008851.1_g000011.1  8 KIENLPARQVTFSKRRQGLFKKAGELSVLCDAEVAVIVFSSTGKLYES 55
                               79********************************************95 PP
2K-box49.12.4e-17841691398
                      K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                                + +  ++e  +L+ke+     ++R++ G+dLe+L++ eLq+Le+++e +l+++ + K+e +++qi  l  k  el e+n++Lr+
  Rmu_sc0008851.1_g000011.1  84 ELQLEKNECMRLNKELADKILKLRQMEGQDLEELTIDELQRLENRIEGGLSRVLQAKDESIMSQIVALETKGAELTEANNQLRQ 167
                                55667899999999987777788************************************************************9 PP

                      K-box  97 kl 98 
                                +l
  Rmu_sc0008851.1_g000011.1 168 RL 169
                                86 PP
3K-box49.42e-172583421498
                      K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                                 +  ++e  +L+ke+     ++R++ G+dLe+L++ eLq+Le+++e +l+++ + K+e +++qi  l  k  el e+n++Lr++
  Rmu_sc0008851.1_g000011.1 258 LQLENNECMRLNKELADKILKLRQMEGQDLEELTIDELQRLENRIEGGLSRVLQAKDESIMSQIVALETKGAELTEANNQLRQR 341
                                5667788999998887767788************************************************************98 PP

                      K-box  98 l 98 
                                l
  Rmu_sc0008851.1_g000011.1 342 L 342
                                6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    
MNKIKIEKIE NLPARQVTFS KRRQGLFKKA GELSVLCDAE VAVIVFSSTG KLYESSSSST  60
KDVIARYNLH TEDGEEGDQQ PPPELQLEKN ECMRLNKELA DKILKLRQME GQDLEELTID  120
ELQRLENRIE GGLSRVLQAK DESIMSQIVA LETKGAELTE ANNQLRQRLG MPSNGDGNRA  180
SGVALESEIS TDEEGGMASE FATSSTGYYG TGSSTSSLED DSSDNTLSLK LGTKDVIARY  240
NLHTEDGEEG DQQPPPELQL ENNECMRLNK ELADKILKLR QMEGQDLEEL TIDELQRLEN  300
RIEGGLSRVL QAKDESIMSQ IVALETKGAE LTEANNQLRQ RLGMLSNGDG NRASGVALES  360
EISTDEEGGM ASEFATSSTG YYGTGSSTSS LEDDSSDNTL SLKLGLPRCG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.12e-56MIKC_MADS family protein