PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0004860.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 997aa MW: 111440 Da PI: 5.7196

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0004860.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41	3.5e-13	45	121	16	99
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + lp k a+ ++ ++ led++g +W+v + + g+ +++GW+ F+ +++L++gDf+vF ++ s f +vk++++ Rmu_sc0004860.1_g000002.1 45 MELPPKVARILLLS---DRRTFLEDSRGLRWKVAI--SSVNGSWAFQQGWNAFALDHDLQVGDFLVFNYVVGSHF--TVKIYDN 121 55666666333333...335789**********..555556789********************9976888..9999886 PP

Sequence ? help Back to Top
Protein Sequence Length: 997 aa Download sequence
MVHDFEACAD CTQKCLLIHG NKKSGSHIET SFFKIMFGKQ FSKFMELPPK VARILLLSDR 60 RTFLEDSRGL RWKVAISSVN GSWAFQQGWN AFALDHDLQV GDFLVFNYVV GSHFTVKIYD 120 NSGCEVNLFE TIHQNNRNRV HTDGQCHTIG KSTVSKSVSD TFAGPDAEIS KCLNEVHGMK 180 KPLIITENAS DHDDDERSKC KRKAEFADDM SCMMEREYGH QQGDNRVRIL DLSSFESFKK 240 IKTCGSDGSN KVAAVNETHS HHADSSLKLR NEVSSVKIPV AKGLVDRVIP SDASEIERTQ 300 KNNYSEYKVK GAPLSDKDSS TNVTSGHLFP TLPENPEQKE EIFSDISNRA AKKCQSANVS 360 GNDHQVAVSG NQHDLIDDTC QSANKKITEI SKSCDKVMKV IENKPVELTS HPCGQEVIPE 420 NIVMMNIGKE SVDLTSDPCS REVIPERKDK AGTIFENVIV DLTSDQCSQE VIEKEESLDL 480 STKVGIQIPS GPAEFERTEE CNKSEAKVNR VPSDKDSCTE TSGHPFPTHS ENPEENGETT 540 SKKATKECRN ADGSELLSGK DQVVLSQKEP DLMYASSPRD NKKLTGISES IHNPLTFECQ 600 NYDVIINEKE SVEVTCQEVI PQGKDTIIIE NKSVEVTLEP CSQEVIPERK DRIVIGEESV 660 DLTLDPSCQE FIPETKGESL KVFNRVHRQR ANTNIRVVPS DASDLERTEK RNYSEVKVRK 720 VSTSDKVPHT KQTSCHLNPI RHVHVEEDKT NIPKISNRGI NKLKTTDGSV AASQKEQVSI 780 DDSCQQAKKK FTGISNSFEA PVTSGSQYYS AKMSKIMEKE FVNSSSDPCS QEIIPEVDAL 840 SSKISNKLQS QSNFARKNDS ALSVVKPEPI EDAGATFPSF TISCLATDRQ SFLELPKSLP 900 LPLNTMKGRS KLDRRIVYLQ GPDKRLWPVL YIQKFFFRTL ANGWEAFSMA NNIEQGDRCT 960 IEVTNQTEGI CSVHIVKMRD DMEFYEEYEH SPLIDLS

Sequence ? help Back to Top

Protein Sequence Length: 997 aa Download sequence

MVHDFEACAD CTQKCLLIHG NKKSGSHIET SFFKIMFGKQ FSKFMELPPK VARILLLSDR  60
RTFLEDSRGL RWKVAISSVN GSWAFQQGWN AFALDHDLQV GDFLVFNYVV GSHFTVKIYD  120
NSGCEVNLFE TIHQNNRNRV HTDGQCHTIG KSTVSKSVSD TFAGPDAEIS KCLNEVHGMK  180
KPLIITENAS DHDDDERSKC KRKAEFADDM SCMMEREYGH QQGDNRVRIL DLSSFESFKK  240
IKTCGSDGSN KVAAVNETHS HHADSSLKLR NEVSSVKIPV AKGLVDRVIP SDASEIERTQ  300
KNNYSEYKVK GAPLSDKDSS TNVTSGHLFP TLPENPEQKE EIFSDISNRA AKKCQSANVS  360
GNDHQVAVSG NQHDLIDDTC QSANKKITEI SKSCDKVMKV IENKPVELTS HPCGQEVIPE  420
NIVMMNIGKE SVDLTSDPCS REVIPERKDK AGTIFENVIV DLTSDQCSQE VIEKEESLDL  480
STKVGIQIPS GPAEFERTEE CNKSEAKVNR VPSDKDSCTE TSGHPFPTHS ENPEENGETT  540
SKKATKECRN ADGSELLSGK DQVVLSQKEP DLMYASSPRD NKKLTGISES IHNPLTFECQ  600
NYDVIINEKE SVEVTCQEVI PQGKDTIIIE NKSVEVTLEP CSQEVIPERK DRIVIGEESV  660
DLTLDPSCQE FIPETKGESL KVFNRVHRQR ANTNIRVVPS DASDLERTEK RNYSEVKVRK  720
VSTSDKVPHT KQTSCHLNPI RHVHVEEDKT NIPKISNRGI NKLKTTDGSV AASQKEQVSI  780
DDSCQQAKKK FTGISNSFEA PVTSGSQYYS AKMSKIMEKE FVNSSSDPCS QEIIPEVDAL  840
SSKISNKLQS QSNFARKNDS ALSVVKPEPI EDAGATFPSF TISCLATDRQ SFLELPKSLP  900
LPLNTMKGRS KLDRRIVYLQ GPDKRLWPVL YIQKFFFRTL ANGWEAFSMA NNIEQGDRCT  960
IEVTNQTEGI CSVHIVKMRD DMEFYEEYEH SPLIDLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	4e-10	B3 family protein