PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0003567.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CAMTA

Protein Properties

Length: 915aa MW: 103628 Da PI: 7.3204

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0003567.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164.1	2.4e-51	25	142	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycy 84 ++e k rwl+++ei+aiL n++ +++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++y Rmu_sc0003567.1_g000011.1 25 MEEaKGRWLRPNEIHAILYNYKYFTINVKPVNLPQSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVY 108 455599**************************************************************************** PP CG-1 85 YahseenptfqrrcywlLeeelekivlvhylevk 118 Yah+e+ +tf rrcywlL+++le+ivlvhy+e++ Rmu_sc0003567.1_g000011.1 109 YAHGEDSSTFVRRCYWLLDKSLEHIVLVHYRETQ 142 *****************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence
MDKPLVGAEI HGFHTMQDLD VDTMMEEAKG RWLRPNEIHA ILYNYKYFTI NVKPVNLPQS 60 GTIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGEDSSTFVR 120 RCYWLLDKSL EHIVLVHYRE TQELQGSPAT PVNSNSNSSS ISDPSAPWRL SEELDSGANN 180 SYYGGANELL EPGIGLNVNN HEQRLHDINT LEWDELLVTY DSKGDKVSGF DQQNQLVGNG 240 AISGGTSGLP AEVSSFGNLL NPSVRTGNLH FNLPDSNYVQ TLEGEVNSNA QRMDSVVKGP 300 CDSSDILGND GLRSQDSFGR WINQIMTNSP GSVDDPVLES SFPASQSTFA SPAMEHIQSS 360 VPEQIFIITD VSPAWAFSNE KTKILITGFF HQEFLDLAKS NLVCICGDVC IPAEIVQVGV 420 YRCFIPPHVP RFVNLFISLD GHKPISQIQN FEYRSPVMSN LVVPSGENKL EEFQLQMRLA 480 HLLFSSSKSL NIASSKVSPH TLKEAKKFSH RTSDISNSWQ CLIKSIEVNN APLPLAKDSL 540 FELILKNRLK DWLLEKVLDS SKTKEYDGHG QGVIHLCAIL DYTWAVRLFS WSGLSLDFRD 600 RRGWTALHWA AYHGREKMVA VLLSAGAKPN LVTDPTSENP GGCTAADLAF MKGYEGLAAY 660 LSEKALLRQF EDMSIAGNVS GSLQTNTNCY QHSENLSEED LYLNDTLTAY RTAADAAARI 720 QAAFRENALK LKTKAVESYS PEDEARSIIA ALKIQHAFRH YDTRKKMAAA ARIQYRFRTW 780 KIRQEFLNMR RQAVKIQAAF RAFQTRKQYR KILWGVGVLE KAVLRWRLKR KGLRGLQVDP 840 IEADGDEKQE SDTEEDFYRN SRKQAEERVE RSIVRVQAMF RSKKAQQEYS RMKLAHTEAK 900 LEYEDIFDPD NNMRR

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence

MDKPLVGAEI HGFHTMQDLD VDTMMEEAKG RWLRPNEIHA ILYNYKYFTI NVKPVNLPQS  60
GTIVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG NEERIHVYYA HGEDSSTFVR  120
RCYWLLDKSL EHIVLVHYRE TQELQGSPAT PVNSNSNSSS ISDPSAPWRL SEELDSGANN  180
SYYGGANELL EPGIGLNVNN HEQRLHDINT LEWDELLVTY DSKGDKVSGF DQQNQLVGNG  240
AISGGTSGLP AEVSSFGNLL NPSVRTGNLH FNLPDSNYVQ TLEGEVNSNA QRMDSVVKGP  300
CDSSDILGND GLRSQDSFGR WINQIMTNSP GSVDDPVLES SFPASQSTFA SPAMEHIQSS  360
VPEQIFIITD VSPAWAFSNE KTKILITGFF HQEFLDLAKS NLVCICGDVC IPAEIVQVGV  420
YRCFIPPHVP RFVNLFISLD GHKPISQIQN FEYRSPVMSN LVVPSGENKL EEFQLQMRLA  480
HLLFSSSKSL NIASSKVSPH TLKEAKKFSH RTSDISNSWQ CLIKSIEVNN APLPLAKDSL  540
FELILKNRLK DWLLEKVLDS SKTKEYDGHG QGVIHLCAIL DYTWAVRLFS WSGLSLDFRD  600
RRGWTALHWA AYHGREKMVA VLLSAGAKPN LVTDPTSENP GGCTAADLAF MKGYEGLAAY  660
LSEKALLRQF EDMSIAGNVS GSLQTNTNCY QHSENLSEED LYLNDTLTAY RTAADAAARI  720
QAAFRENALK LKTKAVESYS PEDEARSIIA ALKIQHAFRH YDTRKKMAAA ARIQYRFRTW  780
KIRQEFLNMR RQAVKIQAAF RAFQTRKQYR KILWGVGVLE KAVLRWRLKR KGLRGLQVDP  840
IEADGDEKQE SDTEEDFYRN SRKQAEERVE RSIVRVQAMF RSKKAQQEYS RMKLAHTEAK  900
LEYEDIFDPD NNMRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	CAMTA family protein