PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002927.1_g000032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C2H2 | ||||||||
Protein Properties | Length: 377aa MW: 43132.8 Da PI: 7.0801 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.3e-05 | 219 | 238 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Rmu_sc0002927.1_g000032.1 219 FSCPVCFKTFNRYNNMQMHM 238 89*****************9 PP | |||||||
2 | zf-C2H2 | 14.4 | 0.00011 | 303 | 325 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Rmu_sc0002927.1_g000032.1 303 FMCRKCGKAFAVRGDWRTHEKNC 325 89*****************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence |
MAEYPYSSNF FTGLFKFNPL LHHHHHHEYP LISNPPPPPQ PQPQPQPPYA HNFFNINYNQ 60 NHNQYSSFYS SQTTHHQPPS PPLREALPLL NRFSPTKHHE DEEQEHHHHH EYYSCSTDQM 120 DVDDKISKPY NKEDHGEDDE ASVTVALHIG LPSPSAAEMA SVLSAASSSS EISTTHDKDH 180 VIGDHGDDST GYPMNRSSLN KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG 240 HGSQYRKGPE SLRGTQPTGM LRLPCYCCTP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI 300 KPFMCRKCGK AFAVRGDWRT HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GNGHAAYGID 360 GFEEDDEPAS EVEQDND |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57670.1 | 1e-137 | C2H2 family protein |