PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002421.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 381aa MW: 44003.2 Da PI: 8.7846

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002421.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.8	3.4e-22	87	146	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ Rmu_sc0002421.1_g000001.1 87 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 146 7***************99************************************97 PP
2	Wus_type_Homeobox	115.5	2.5e-37	86	148	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ Rmu_sc0002421.1_g000001.1 86 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 148 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MWMMGYNDGG DFNMIPDSAF NGRKLRPLVP RPLSSPHNNN NTSTSTHAPP CFSRIHAASD 60 FLAQYHQLGE QRGMREFNTV PQVVVSSRWN PTPEQLRALE ELYRRGTRTP SAEQIQQITA 120 QLRRYGKIEG KNVFYWFQNH KARERQKRRR QMESHDDLQL MCSDHQKKES LGGASRTVYE 180 VEETKNWAPS ANCMTTSLQD QLHHQQETVK AGAESRTEAW VQFGEEELQP LQQEQRRNSM 240 TVEKNARWQM MQLSCPPPPR LHDLTHLINA PTCTRTTVRT MEMDQKQLIN NRNNKTSPPH 300 DLSIFIAPYR SGAALNGRHL QHRNEEEDIS RGDQSQTLQL FPLRSSTCGE KDNLTTEKSL 360 LNPSFGTGPN YQFFEFLPLK N

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MWMMGYNDGG DFNMIPDSAF NGRKLRPLVP RPLSSPHNNN NTSTSTHAPP CFSRIHAASD  60
FLAQYHQLGE QRGMREFNTV PQVVVSSRWN PTPEQLRALE ELYRRGTRTP SAEQIQQITA  120
QLRRYGKIEG KNVFYWFQNH KARERQKRRR QMESHDDLQL MCSDHQKKES LGGASRTVYE  180
VEETKNWAPS ANCMTTSLQD QLHHQQETVK AGAESRTEAW VQFGEEELQP LQQEQRRNSM  240
TVEKNARWQM MQLSCPPPPR LHDLTHLINA PTCTRTTVRT MEMDQKQLIN NRNNKTSPPH  300
DLSIFIAPYR SGAALNGRHL QHRNEEEDIS RGDQSQTLQL FPLRSSTCGE KDNLTTEKSL  360
LNPSFGTGPN YQFFEFLPLK N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	5e-55	WOX family protein