PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002340.1_g000019.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 309aa    MW: 35745 Da    PI: 6.61
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002340.1_g000019.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.51.9e-47141403128
                        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                                pGfrFhPt+eel+ +yLk  v gk+l++ ++i+ ++iy+++PwdLp   k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkat
  Rmu_sc0002340.1_g000019.1  14 PGFRFHPTEEELLEFYLKSVVFGKRLRF-DIIEFLNIYRHDPWDLPGLSKIGEREWYFFVPRDRKHGSGGRPNRTTETGFWKAT 96 
                                9*************************99.99***************8778899******************************* PP

                        NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                g+d++++s    ++ +gl+ktLvfykgrap+g+ktdWvm+eyrl
  Rmu_sc0002340.1_g000019.1  97 GSDRKIVSLsdPKRIIGLRKTLVFYKGRAPRGTKTDWVMNEYRL 140
                                ******997666778***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MASEMTPPAE LELPGFRFHP TEEELLEFYL KSVVFGKRLR FDIIEFLNIY RHDPWDLPGL  60
SKIGEREWYF FVPRDRKHGS GGRPNRTTET GFWKATGSDR KIVSLSDPKR IIGLRKTLVF  120
YKGRAPRGTK TDWVMNEYRL PDNCKLLKDI VLCKIYRKAT SLKVLEQRAA MEEEMKMGFH  180
ANSPNISASP PTSMDTTMSF SSFQEQEAHQ HHHDLTAQIP IIPTNLKKEL ADDAALTPVD  240
EQRKEEDEQA MEMKEAPTCL HTSFGKDKLP ELLVPKMSMD WTQDQFWAPM NSPWLLPTPY  300
ANILNMELL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-107NAC family protein