PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0002225.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | WRKY | ||||||||
Protein Properties | Length: 192aa MW: 21751.4 Da PI: 9.7373 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.1 | 7.7e-33 | 113 | 171 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H h+ Rmu_sc0002225.1_g000001.1 113 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGMHSHP 171 59********************************************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MMETYPTFCS SSSTTPPAAA SSLSLNMVNS HPHHAYSNDQ YQASNNKSNG FLGLMSEMEV 60 SNSINSMSSI SQSMKSFGEG ESNTAVRAGM KKGEKKIRKP RYAFQTRSQV DILDDGYRWR 120 KYGQKAVKNN KFPRSYYRCT HQGCNVKKQV QRLTKDEGVV VTTYEGMHSH PIEKSTDNFE 180 HILTQMQIYT SF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 2e-60 | WRKY family protein |