PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001878.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 965aa    MW: 105614 Da    PI: 5.9048
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001878.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-18563357
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Rmu_sc0001878.1_g000010.1  5 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                               6789*****************************************************97 PP
2START171.17.4e-541543612204
                                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS
                      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 
                                +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l  i
  Rmu_sc0001878.1_g000010.1 154 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNSSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRCLDVLSII 236
                                68999*****************************************************.8888888888*************** PP

                                CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS
                      START  86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163
                                  g  g+++l +++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p+   s+s+vRae+lpSg+li+p+++g+s 
  Rmu_sc0001878.1_g000010.1 237 PAGngGTIELLYMQTYAPTTLAAaRDFWTLRYTTTLEDGSLVVCERSLTSSTGGPTgppSPSFVRAEMLPSGFLIRPCEGGGSI 320
                                *9999**********************************************99999999************************* PP

                                EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                      START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                +++v+hvdl++++++++lrsl++s+ + ++k++va+l++ +
  Rmu_sc0001878.1_g000010.1 321 IHIVDHVDLDAWSVPEVLRSLYESSKIIAQKMTVAALRHIR 361
                                *************************************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    
MDSSKYVRYT PEQVEALERV YSECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKESSRL TTVNRKLSAM NKLLMEENDR LQKQVSHLVY ENGFMKQQLH TASGTTTDNS  120
CESVVMNGQH QQQHNPTPQH PQRDANNPAG LLAIAEETLA EFLSKATGTA VDWVQMIGMK  180
PGPDSIGIVA VSRNSSGVAA RACGLVSLEP TKVAEILKDR PSWFRDCRCL DVLSIIPAGN  240
GGTIELLYMQ TYAPTTLAAA RDFWTLRYTT TLEDGSLVVC ERSLTSSTGG PTGPPSPSFV  300
RAEMLPSGFL IRPCEGGGSI IHIVDHVDLD AWSVPEVLRS LYESSKIIAQ KMTVAALRHI  360
RQIAQEATGE IQYAGGRQPA VLRTFSQRLC RGFNDAVNGF ADDGWSLLGS DGAEDVTIAI  420
NSSPNKFLGS QYNASIFPSF GGGVLCAKAS MLLQSVPPAL LVRFLREHRS EWADYGVDAY  480
SAACLKASPY AVPCARPGGF PSSQVILPLA PTVENEEFLE VVRLEGHAYS PEDVALARDM  540
FLLQLCSGVD ENAVGACAQL VFAPIDESFA DDAPLLPSGF HVIPLDAKTD GPTANRTLDL  600
ASTLEVGASS ARRVNEGDAN SYNLRSVLTI AFQFTFENHL RDSVAAMARQ YVRGVVSSVQ  660
RVAMAIAPSR LSSQMGPKSL PGSPEAHTLA RWIFRSYRIH TGAELFRLDS PSGDAVLKQL  720
WNHPDAIMCC SVKTNASPVF TFANQAGLDM LETTLVALQD IMLDKILDEA GRKVLCSEFS  780
KIMHQGFAYL PAGICASSMG RPVSYEQAIA WKVVDDDDSN HCLALMFTNW IHTGAELFRL  840
DSPSGDAVLK QLWNHPDAIM CCSVKTNASP VFTFANQAGL DMLETTLVAL QDIMLDKILD  900
EAGRKVLCSE FSKIMHQGFA YLPAGICASS MGRPVSYEQA IAWKVVDDDD SNHCLALMFT  960
NWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein