PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001576.1_g000017.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LFY
Protein Properties Length: 153aa    MW: 16827 Da    PI: 4.7139
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001576.1_g000017.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY1856.1e-5711531148
                    FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseap...leaaaaaaarklr......eleelfkayGvryltvakiaelGftv 75 
                                mdp+afsas+fkwd r +a++p+ r++ eaa+++++   ++aaaaaa +++r      +le++f+ayGvry+t+a+ia+lGftv
  Rmu_sc0001576.1_g000017.1   1 MDPDAFSASMFKWDLRGMAVPPS-RVQLEAAAVAPQqaaAAAAAAAAGYSVRgprevvGLEDMFRAYGVRYYTAARIADLGFTV 83 
                                9**************98886655.5655555544442223334444455566999999************************** PP

                    FLO_LFY  76 stLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeg 148
                                stL+dmkdeeldd+m+s+s+ fr++llvGeryGikaa+raerrrleee+  ++rr+ ls d+ +a+dalsqeg
  Rmu_sc0001576.1_g000017.1  84 STLLDMKDEELDDMMNSVSQFFRVELLVGERYGIKAAIRAERRRLEEED--SRRRHSLSGDT-NAMDALSQEG 153
                                ***********************************************88..88888999996.68*******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MDPDAFSASM FKWDLRGMAV PPSRVQLEAA AVAPQQAAAA AAAAAAGYSV RGPREVVGLE  60
DMFRAYGVRY YTAARIADLG FTVSTLLDMK DEELDDMMNS VSQFFRVELL VGERYGIKAA  120
IRAERRRLEE EDSRRRHSLS GDTNAMDALS QEG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.13e-21LFY family protein